R: Timescale-Specific Variance Ratio for Use in Community Ecology

# Timescale-Specific Variance Ratio for Use in Community Ecology

## Documentation for package ‘tsvr’ version 1.0.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

A C E G J P S T V W

## -- A --

aggts | Aggregates a 'tsvreq_classic' object across a set of timescales; also the constructor function for class 'vreq_classic_ag'.

## -- C --

cospect | Calculate the cospectrum between all pairs of time series
cv2 | Calculates various measures of population and community variability
cv2f | Compute a frequency-specific version of CVcom or CVcomip

## -- E --

errcheck_data | Error check a data matrix.
errcheck_tsvreq | Error check inputs for the creator function for the 'tsvreq' class.
errcheck_vreq | Error check inputs for the creator function for the 'vreq' class.

## -- G --

get_com | Set and get methods for classes in the 'tsvr' package
get_com.default | Set and get methods for classes in the 'tsvr' package
get_com.tsvreq | Basic methods for the 'tsvreq' class
get_com.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
get_com.vreq | Basic methods for the 'vreq' class
get_com.vreq_classic | Basic methods for the 'vreq_classic' class
get_com.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
get_com.vreq_LdM | Basic methods for the 'vreq_LdM' class
get_comnull | Set and get methods for classes in the 'tsvr' package
get_comnull.default | Set and get methods for classes in the 'tsvr' package
get_comnull.tsvreq | Basic methods for the 'tsvreq' class
get_comnull.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
get_comnull.vreq | Basic methods for the 'vreq' class
get_comnull.vreq_classic | Basic methods for the 'vreq_classic' class
get_comnull.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
get_comnull.vreq_LdM | Basic methods for the 'vreq_LdM' class
get_ts | Set and get methods for classes in the 'tsvr' package
get_ts.default | Set and get methods for classes in the 'tsvr' package
get_ts.tsvreq | Basic methods for the 'tsvreq' class
get_ts.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
get_ts.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
get_tsvr | Set and get methods for classes in the 'tsvr' package
get_tsvr.default | Set and get methods for classes in the 'tsvr' package
get_tsvr.tsvreq | Basic methods for the 'tsvreq' class
get_tsvr.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
get_vr | Set and get methods for classes in the 'tsvr' package
get_vr.default | Set and get methods for classes in the 'tsvr' package
get_vr.vreq | Basic methods for the 'vreq' class
get_vr.vreq_classic | Basic methods for the 'vreq_classic' class
get_vr.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
get_vr.vreq_LdM | Basic methods for the 'vreq_LdM' class
get_wts | Set and get methods for classes in the 'tsvr' package
get_wts.default | Set and get methods for classes in the 'tsvr' package
get_wts.tsvreq | Basic methods for the 'tsvreq' class
get_wts.tsvreq_classic | Basic methods for the 'tsvreq_classic' class

## -- J --

JRGdat | Percent cover data from Jasper Ridge Biological Preserve serpentine grassland site

## -- P --

plot.tsvreq | Basic methods for the 'tsvreq' class
plot.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
print.summary_tsvr | Print method for 'summary_tsvr' class
print.tsvreq | Basic methods for the 'tsvreq' class
print.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
print.vreq | Basic methods for the 'vreq' class
print.vreq_classic | Basic methods for the 'vreq_classic' class
print.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
print.vreq_LdM | Basic methods for the 'vreq_LdM' class

## -- S --

setget_methods | Set and get methods for classes in the 'tsvr' package
set_com | Set and get methods for classes in the 'tsvr' package
set_com.default | Set and get methods for classes in the 'tsvr' package
set_com.tsvreq | Basic methods for the 'tsvreq' class
set_com.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
set_com.vreq | Basic methods for the 'vreq' class
set_com.vreq_classic | Basic methods for the 'vreq_classic' class
set_com.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
set_com.vreq_LdM | Basic methods for the 'vreq_LdM' class
set_comnull | Set and get methods for classes in the 'tsvr' package
set_comnull.default | Set and get methods for classes in the 'tsvr' package
set_comnull.tsvreq | Basic methods for the 'tsvreq' class
set_comnull.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
set_comnull.vreq | Basic methods for the 'vreq' class
set_comnull.vreq_classic | Basic methods for the 'vreq_classic' class
set_comnull.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
set_comnull.vreq_LdM | Basic methods for the 'vreq_LdM' class
set_ts | Set and get methods for classes in the 'tsvr' package
set_ts.default | Set and get methods for classes in the 'tsvr' package
set_ts.tsvreq | Basic methods for the 'tsvreq' class
set_ts.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
set_ts.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
set_tsvr | Set and get methods for classes in the 'tsvr' package
set_tsvr.default | Set and get methods for classes in the 'tsvr' package
set_tsvr.tsvreq | Basic methods for the 'tsvreq' class
set_tsvr.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
set_vr | Set and get methods for classes in the 'tsvr' package
set_vr.default | Set and get methods for classes in the 'tsvr' package
set_vr.vreq | Basic methods for the 'vreq' class
set_vr.vreq_classic | Basic methods for the 'vreq_classic' class
set_vr.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
set_vr.vreq_LdM | Basic methods for the 'vreq_LdM' class
set_wts | Set and get methods for classes in the 'tsvr' package
set_wts.default | Set and get methods for classes in the 'tsvr' package
set_wts.tsvreq | Basic methods for the 'tsvreq' class
set_wts.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
summary.tsvreq | Basic methods for the 'tsvreq' class
summary.tsvreq_classic | Basic methods for the 'tsvreq_classic' class
summary.vreq | Basic methods for the 'vreq' class
summary.vreq_classic | Basic methods for the 'vreq_classic' class
summary.vreq_classic_ag | Basic methods for the 'vreq_classic_ag' class
summary.vreq_LdM | Basic methods for the 'vreq_LdM' class

## -- T --

tsvreq | Creator function for the 'tsvreq' S3 class
tsvreq_classic | Creator function for the 'tsvreq_classic' S3 class
tsvreq_classic_methods | Basic methods for the 'tsvreq_classic' class
tsvreq_methods | Basic methods for the 'tsvreq' class

## -- V --

vr | Compute the classic or Loreau-de Mazancourt variance ratio
vreq | Creator function for the 'vreq' S3 class
vreq_classic | Creator function of 'vreq_classic' S3 class
vreq_classic_ag_methods | Basic methods for the 'vreq_classic_ag' class
vreq_classic_methods | Basic methods for the 'vreq_classic' class
vreq_LdM | Creator function of 'vreq_LdM' S3 class
vreq_LdM_methods | Basic methods for the 'vreq_LdM' class
vreq_methods | Basic methods for the 'vreq' class
vrf | Compute the frequency-specific variance ratio

## -- W --

wts | Compute the weights (wts)