R: Generate Starting Trees for Combined Molecular, Morphological and Stratigraphic Data

# Generate Starting Trees for Combined Molecular, Morphological and Stratigraphic Data

## Documentation for package ‘treestartr’ version 0.1.0

- DESCRIPTION file

## Help Pages

treestartr-package | treestartr: A package for generating reasonable starting trees for phylogenetic analysis.
absent_list | bears
absent_tippr | Add tips to tree via user input
bears | bears
dataf_parsr | Detect file format of taxon file
echo_rb | Print RevBayes-formatted clade constriants.
echo_subtree | Print subtrees with tips added.
fileformat | Utility function to check if file is a csv or tsv.
genera_strippr | Check if tip is on tree
get_found | Get dataframe of tips that do not have congeners on tree.
get_lost | Determine if a tip is present on a tree
make_absentdf | Determine which tips are not on the tree, and get their genera.
make_treedf | Determine which tips are on the tree, and get their genera.
mrca_df | bears
present_tippr | Add tips to the tree based on taxonomy.
rand_absent_tippr | Random addition of taxa
taxon_testr | Utility function to check taxon_names in parsed data file
tax_frame | bears
text_placr | Add tips to tree via taxon list
tree | bears
treestartr | treestartr: A package for generating reasonable starting trees for phylogenetic analysis.