.render.server.info     Auxiliary functions
DengueBEASTMCC          Dengue fever BEAST MCC tree
DengueSeqs              Dengue fever sequences
DengueTrees             BEAST analysis of Dengue fever
findGroves              Identify clusters of similar trees
findMRCIs               Find MRCIs
fluTrees                BEAST analysis of seasonal influenza (A/H3N2)
linearMrca              Linear MRCA function
makeCollapsedTree       Collapse a tree into a single tip per category
medTree                 Geometric median tree function
multiDist               Metric function for 'multiPhylo' input
plotGroves              Scatterplot of groups of trees
plotGrovesD3            Scatterplot of groups of trees using
                        'scatterD3'
plotTreeDiff            Plot tree differences
refTreeDist             Metric function for comparing a reference
                        'phylo' to 'multiPhylo' input
relatedTreeDist         Tree distance when trees have "related" tips
simulateIndTree         Simulate randomised "individuals" tree
tipDiff                 Find tip position differences
tipsMRCAdepths          Tip-tip MRCA depths
treeConcordance         Tree concordance
treeDist                Metric function
treeVec                 Tree vector function
treespace               Phylogenetic tree exploration
treespaceServer         Web-based tree explorer
wiwMedTree              Median transmission tree
wiwTreeDist             Transmission tree distance
woodmiceTrees           Bootstrap trees from woodmouse dataset
