Package: toolStability
Type: Package
Title: Tool for Stability Indices Calculation
Version: 0.1.3
Authors@R: c(person('Tien-Cheng','Wang', email ='wangtien@student.hu-berlin.de',
 role=c('aut','cre')),person('Tsu-Wei','Chen',email='tsu-wei.chen@hu-berlin.de',role='com'))
Author: Tien-Cheng Wang [aut, cre],
  Tsu-Wei Chen [com]
Maintainer: Tien-Cheng Wang <wangtien@student.hu-berlin.de>
Description: Tools to calculate stability indices with parametric,
 non-parametric and probabilistic approaches. The basic data format requirement for 'toolStability' is a data frame with 3 columns including numeric trait values, genotype,and environmental labels. Output format of each function is the dataframe with chosen stability index for each genotype. 
 Function "table_stability" offers the summary table of all stability indices in this package. 
 This R package toolStability is part of the main publication: 
 Wang, Casadebaig and Chen (2023) <doi:10.1007/s00122-023-04264-7>. 
 Analysis pipeline for main publication can be found on github: <https://github.com/Illustratien/Wang_2023_TAAG>. 
 Sample dataset in this package is derived from another publication:  
 Casadebaig P, Zheng B, Chapman S et al. (2016) <doi:10.1371/journal.pone.0146385>. 
 For detailed documentation of dataset, please see on Zenodo <doi:10.5281/zenodo.4729636>. 
 Indices used in this package are from: 
 Döring TF, Reckling M (2018) <doi:10.1016/j.eja.2018.06.007>. 
 Eberhart SA, Russell WA (1966) <doi:10.2135/cropsci1966.0011183X000600010011x>. 
 Eskridge KM (1990) <doi:10.2135/cropsci1990.0011183X003000020025x>. 
 Finlay KW, Wilkinson GN (1963) <doi:10.1071/AR9630742>. 
 Hanson WD (1970) Genotypic stability. <doi:10.1007/BF00285245>. 
 Lin CS, Binns MR (1988). 
 Nassar R, Hühn M (1987). 
 Pinthus MJ (1973) <doi:10.1007/BF00021563>. 
 Römer T (1917). 
 Shukla GK (1972). 
 Wricke G (1962). 
Depends: R (>= 3.5.0)
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Imports: dplyr, data.table, Rdpack, nortest, stats
Suggests: testthat (>= 3.0.0), ggplot2, knitr, rmarkdown, pkgdown,
        pander, XML, httr, RCurl, covr
RdMacros: Rdpack
URL: https://illustratien.github.io/toolStability/,
        https://link.springer.com/article/10.1007/s00122-023-04264-7,
        https://github.com/Illustratien/toolStability,
        https://github.com/Illustratien/Wang_2023_TAAG,
        https://doi.org/10.5281/zenodo.4729636
BugReports: https://github.com/Illustratien/toolStability/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LazyLoad: true
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-05-15 12:23:36 UTC; marse
Repository: CRAN
Date/Publication: 2025-05-15 12:50:02 UTC
Built: R 4.6.0; ; 2026-04-29 08:57:42 UTC; unix
