# Generated by roxygen2: do not edit by hand

S3method("%has%",default)
S3method("%has%",sq)
S3method("%has%",sq_ami_bsc)
S3method("%has%",sq_ami_ext)
S3method("%has%",sq_dna_bsc)
S3method("%has%",sq_dna_ext)
S3method("%has%",sq_rna_bsc)
S3method("%has%",sq_rna_ext)
S3method("==",sq)
S3method("[",sq_alphabet)
S3method("sq_type<-",default)
S3method("sq_type<-",sq)
S3method(as.character,sq)
S3method(as.matrix,sq)
S3method(as.sq,character)
S3method(as.sq,default)
S3method(bite,default)
S3method(bite,sq)
S3method(collapse,default)
S3method(collapse,sq)
S3method(complement,default)
S3method(complement,sq_dna_bsc)
S3method(complement,sq_dna_ext)
S3method(complement,sq_rna_bsc)
S3method(complement,sq_rna_ext)
S3method(export_sq,default)
S3method(export_sq,sq_ami_bsc)
S3method(export_sq,sq_ami_ext)
S3method(export_sq,sq_dna_bsc)
S3method(export_sq,sq_dna_ext)
S3method(export_sq,sq_rna_bsc)
S3method(export_sq,sq_rna_ext)
S3method(find_invalid_letters,default)
S3method(find_invalid_letters,sq)
S3method(find_motifs,data.frame)
S3method(find_motifs,default)
S3method(find_motifs,sq)
S3method(format,encsq)
S3method(format,pillar_shaft_sq)
S3method(format,sq)
S3method(import_sq,AAString)
S3method(import_sq,AAStringSet)
S3method(import_sq,AAbin)
S3method(import_sq,BString)
S3method(import_sq,BStringSet)
S3method(import_sq,DNAString)
S3method(import_sq,DNAStringSet)
S3method(import_sq,DNAbin)
S3method(import_sq,RNAString)
S3method(import_sq,RNAStringSet)
S3method(import_sq,SeqFastaAA)
S3method(import_sq,SeqFastadna)
S3method(import_sq,XStringSetList)
S3method(import_sq,alignment)
S3method(import_sq,bioseq_aa)
S3method(import_sq,bioseq_dna)
S3method(import_sq,bioseq_rna)
S3method(import_sq,default)
S3method(import_sq,list)
S3method(is_empty_sq,default)
S3method(is_empty_sq,sq)
S3method(obj_print_data,sq)
S3method(obj_print_footer,sq)
S3method(obj_print_header,sq)
S3method(pack,character)
S3method(pack,list)
S3method(paste,default)
S3method(paste,sq)
S3method(pillar_shaft,encsq)
S3method(pillar_shaft,sq)
S3method(remove_ambiguous,default)
S3method(remove_ambiguous,sq)
S3method(remove_na,default)
S3method(remove_na,sq)
S3method(reverse,default)
S3method(reverse,sq)
S3method(sq_type,default)
S3method(sq_type,sq)
S3method(sqapply,default)
S3method(sqapply,sq)
S3method(substitute_letters,default)
S3method(substitute_letters,sq)
S3method(translate,default)
S3method(translate,sq_dna_bsc)
S3method(translate,sq_rna_bsc)
S3method(typify,default)
S3method(typify,sq)
S3method(vec_cast,character.sq_alphabet)
S3method(vec_cast,character.sq_ami_bsc)
S3method(vec_cast,character.sq_ami_ext)
S3method(vec_cast,character.sq_atp)
S3method(vec_cast,character.sq_dna_bsc)
S3method(vec_cast,character.sq_dna_ext)
S3method(vec_cast,character.sq_rna_bsc)
S3method(vec_cast,character.sq_rna_ext)
S3method(vec_cast,character.sq_unt)
S3method(vec_cast,sq_alphabet.character)
S3method(vec_cast,sq_alphabet.sq_alphabet)
S3method(vec_cast,sq_ami_bsc.character)
S3method(vec_cast,sq_ami_bsc.sq_ami_bsc)
S3method(vec_cast,sq_ami_bsc.sq_unt)
S3method(vec_cast,sq_ami_ext.character)
S3method(vec_cast,sq_ami_ext.sq_ami_bsc)
S3method(vec_cast,sq_ami_ext.sq_ami_ext)
S3method(vec_cast,sq_ami_ext.sq_unt)
S3method(vec_cast,sq_atp.character)
S3method(vec_cast,sq_atp.sq_atp)
S3method(vec_cast,sq_dna_bsc.character)
S3method(vec_cast,sq_dna_bsc.sq_dna_bsc)
S3method(vec_cast,sq_dna_bsc.sq_unt)
S3method(vec_cast,sq_dna_ext.character)
S3method(vec_cast,sq_dna_ext.sq_dna_bsc)
S3method(vec_cast,sq_dna_ext.sq_dna_ext)
S3method(vec_cast,sq_dna_ext.sq_unt)
S3method(vec_cast,sq_rna_bsc.character)
S3method(vec_cast,sq_rna_bsc.sq_rna_bsc)
S3method(vec_cast,sq_rna_bsc.sq_unt)
S3method(vec_cast,sq_rna_ext.character)
S3method(vec_cast,sq_rna_ext.sq_rna_bsc)
S3method(vec_cast,sq_rna_ext.sq_rna_ext)
S3method(vec_cast,sq_rna_ext.sq_unt)
S3method(vec_cast,sq_unt.character)
S3method(vec_cast,sq_unt.sq_ami_bsc)
S3method(vec_cast,sq_unt.sq_ami_ext)
S3method(vec_cast,sq_unt.sq_dna_bsc)
S3method(vec_cast,sq_unt.sq_dna_ext)
S3method(vec_cast,sq_unt.sq_rna_bsc)
S3method(vec_cast,sq_unt.sq_rna_ext)
S3method(vec_cast,sq_unt.sq_unt)
S3method(vec_ptype2,character.sq_alphabet)
S3method(vec_ptype2,character.sq_ami_bsc)
S3method(vec_ptype2,character.sq_ami_ext)
S3method(vec_ptype2,character.sq_atp)
S3method(vec_ptype2,character.sq_dna_bsc)
S3method(vec_ptype2,character.sq_dna_ext)
S3method(vec_ptype2,character.sq_rna_bsc)
S3method(vec_ptype2,character.sq_rna_ext)
S3method(vec_ptype2,character.sq_unt)
S3method(vec_ptype2,sq_alphabet.character)
S3method(vec_ptype2,sq_ami_bsc.character)
S3method(vec_ptype2,sq_ami_bsc.sq_ami_bsc)
S3method(vec_ptype2,sq_ami_bsc.sq_ami_ext)
S3method(vec_ptype2,sq_ami_bsc.sq_unt)
S3method(vec_ptype2,sq_ami_ext.character)
S3method(vec_ptype2,sq_ami_ext.sq_ami_bsc)
S3method(vec_ptype2,sq_ami_ext.sq_ami_ext)
S3method(vec_ptype2,sq_ami_ext.sq_unt)
S3method(vec_ptype2,sq_atp.character)
S3method(vec_ptype2,sq_atp.sq_atp)
S3method(vec_ptype2,sq_dna_bsc.character)
S3method(vec_ptype2,sq_dna_bsc.sq_dna_bsc)
S3method(vec_ptype2,sq_dna_bsc.sq_dna_ext)
S3method(vec_ptype2,sq_dna_bsc.sq_unt)
S3method(vec_ptype2,sq_dna_ext.character)
S3method(vec_ptype2,sq_dna_ext.sq_dna_bsc)
S3method(vec_ptype2,sq_dna_ext.sq_dna_ext)
S3method(vec_ptype2,sq_dna_ext.sq_unt)
S3method(vec_ptype2,sq_rna_bsc.character)
S3method(vec_ptype2,sq_rna_bsc.sq_rna_bsc)
S3method(vec_ptype2,sq_rna_bsc.sq_rna_ext)
S3method(vec_ptype2,sq_rna_bsc.sq_unt)
S3method(vec_ptype2,sq_rna_ext.character)
S3method(vec_ptype2,sq_rna_ext.sq_rna_bsc)
S3method(vec_ptype2,sq_rna_ext.sq_rna_ext)
S3method(vec_ptype2,sq_rna_ext.sq_unt)
S3method(vec_ptype2,sq_unt.character)
S3method(vec_ptype2,sq_unt.sq_ami_bsc)
S3method(vec_ptype2,sq_unt.sq_ami_ext)
S3method(vec_ptype2,sq_unt.sq_dna_bsc)
S3method(vec_ptype2,sq_unt.sq_dna_ext)
S3method(vec_ptype2,sq_unt.sq_rna_bsc)
S3method(vec_ptype2,sq_unt.sq_rna_ext)
S3method(vec_ptype2,sq_unt.sq_unt)
S3method(vec_ptype_abbr,sq_alphabet)
S3method(vec_ptype_abbr,sq_ami_bsc)
S3method(vec_ptype_abbr,sq_ami_ext)
S3method(vec_ptype_abbr,sq_atp)
S3method(vec_ptype_abbr,sq_dna_bsc)
S3method(vec_ptype_abbr,sq_dna_ext)
S3method(vec_ptype_abbr,sq_rna_bsc)
S3method(vec_ptype_abbr,sq_rna_ext)
S3method(vec_ptype_abbr,sq_unt)
S3method(vec_ptype_full,sq_alphabet)
S3method(vec_ptype_full,sq_ami_bsc)
S3method(vec_ptype_full,sq_ami_ext)
S3method(vec_ptype_full,sq_atp)
S3method(vec_ptype_full,sq_dna_bsc)
S3method(vec_ptype_full,sq_dna_ext)
S3method(vec_ptype_full,sq_rna_bsc)
S3method(vec_ptype_full,sq_rna_ext)
S3method(vec_ptype_full,sq_unt)
S3method(write_fasta,data.frame)
S3method(write_fasta,default)
S3method(write_fasta,sq)
export("%has%")
export("sq_type<-")
export(alphabet)
export(as.sq)
export(bite)
export(collapse)
export(complement)
export(export_sq)
export(find_invalid_letters)
export(find_motifs)
export(get_sq_lengths)
export(get_standard_alphabet)
export(get_tidysq_options)
export(import_sq)
export(is.sq)
export(is.sq_ami)
export(is.sq_ami_bsc)
export(is.sq_ami_ext)
export(is.sq_atp)
export(is.sq_dna)
export(is.sq_dna_bsc)
export(is.sq_dna_ext)
export(is.sq_rna)
export(is.sq_rna_bsc)
export(is.sq_rna_ext)
export(is.sq_unt)
export(is_empty_sq)
export(paste)
export(random_sq)
export(read_fasta)
export(remove_ambiguous)
export(remove_na)
export(reverse)
export(sq)
export(sq_type)
export(sqapply)
export(substitute_letters)
export(translate)
export(typify)
export(write_fasta)
import(checkmate)
import(vctrs)
importFrom(Rcpp,sourceCpp)
importFrom(cli,cat_line)
importFrom(cli,cli_text)
importFrom(cli,col_blue)
importFrom(cli,col_cyan)
importFrom(cli,col_green)
importFrom(cli,col_silver)
importFrom(crayon,col_nchar)
importFrom(dplyr,bind_rows)
importFrom(pillar,new_ornament)
importFrom(pillar,new_pillar_shaft)
importFrom(pillar,pillar_shaft)
importFrom(stats,rnorm)
importFrom(stats,setNames)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(utils,tail)
useDynLib(tidysq, .registration=TRUE)
