%has%                   Test sq object for presence of given motifs
==.sq                   Compare sq objects
alphabet                Get alphabet of given sq object.
as.character.sq         Convert sq object into character vector
as.matrix.sq            Convert sq object into matrix
as.sq                   Convert an object to sq
bite                    Subset sequences from sq objects
collapse                Collapse multiple sequences into one
complement              Create complement sequence from dnasq or rnasq
                        object
export_sq               Export sq objects into other formats
find_invalid_letters    Find elements which are not suitable for
                        specified type.
find_motifs             Find given motifs
get_sq_lengths          Get lengths of sequences in sq object
get_standard_alphabet   Get standard alphabet for given type.
get_tidysq_options      Obtain current state of tidysq options
import_sq               Import sq objects from other objects
is.sq                   Check if object has specified type
is_empty_sq             Test if sequence is empty
paste                   Paste sequences in string-like fashion
random_sq               Generate random sequences
read_fasta              Read a FASTA file
remove_ambiguous        Remove sequences that contain ambiguous
                        elements
remove_na               Remove sequences that contain NA values
reverse                 Reverse sequence
sq                      Construct sq object from character vector
sq-class                sq: class for keeping biological sequences tidy
sq_type                 Get type of an sq object
sqapply                 Apply function to each sequence
sqconcatenate           Concatenate sq objects
sqextract               Extract parts of a sq object
sqprint                 Print sq object
substitute_letters      Substitute letters in a sequence
tidysq-package          tidysq: tidy analysis of biological sequences
translate               Convert DNA or RNA into proteins using genetic
                        code
typify                  Set type of an sq object
write_fasta             Save sq to fasta file
