R: Brings Seurat to the Tidyverse

# Brings Seurat to the Tidyverse

## Documentation for package ‘tidyseurat’ version 0.8.10

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

add_count | Count observations by group
add_count.default | Count observations by group
add_count.Seurat | Count observations by group
aggregate_cells | Aggregate cells
aggregate_cells-method | Aggregate cells
arrange | Order rows using column values
arrange.Seurat | Order rows using column values
as_tibble | Coerce lists, matrices, and more to data frames
as_tibble.Seurat | Coerce lists, matrices, and more to data frames
bind_cols | Efficiently bind multiple data frames by row and column
bind_cols.Seurat | Efficiently bind multiple data frames by row and column
bind_rows | Efficiently bind multiple data frames by row and column
bind_rows.Seurat | Efficiently bind multiple data frames by row and column
cell_type_df | Cell types of 80 PBMC single cells
count | Count observations by group
count.Seurat | Count observations by group
distinct | Keep distinct/unique rows
distinct.Seurat | Keep distinct/unique rows
extract | Extract a character column into multiple columns using regular expression groups
extract.Seurat | Extract a character column into multiple columns using regular expression groups
filter | Keep or drop rows that match a condition
filter.Seurat | Keep or drop rows that match a condition
formatting | Printing tibbles
full_join | Mutating joins
full_join.Seurat | Mutating joins
ggplot | Create a new 'ggplot' from a 'tidyseurat'
ggplot.Seurat | Create a new 'ggplot' from a 'tidyseurat'
glimpse | Get a glimpse of your data
glimpse.tidyseurat | Get a glimpse of your data
group_by | Group by one or more variables
group_by.Seurat | Group by one or more variables
group_split | Split data frame by groups
group_split.Seurat | Split data frame by groups
inner_join | Mutating joins
inner_join.Seurat | Mutating joins
join_features | join_features
join_features-method | join_features
join_transcripts | (DEPRECATED) Extract and join information for transcripts.
left_join | Mutating joins
left_join.Seurat | Mutating joins
mutate | Create, modify, and delete columns
mutate.Seurat | Create, modify, and delete columns
nest | Nest rows into a list-column of data frames
nest.Seurat | Nest rows into a list-column of data frames
pbmc_small_nested_interactions | Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
pivot_longer | Pivot data from wide to long
pivot_longer.Seurat | Pivot data from wide to long
plotly | Initiate a plotly visualization
plot_ly | Initiate a plotly visualization
plot_ly.Seurat | Initiate a plotly visualization
plot_ly.tbl_df | Initiate a plotly visualization
print | Printing tibbles
print.Seurat | Printing tibbles
pull | Extract a single column
pull.Seurat | Extract a single column
rename | Rename columns
rename.Seurat | Rename columns
return_arguments_of | returns variables from an expression
right_join | Mutating joins
right_join.Seurat | Mutating joins
rowwise | Group input by rows
rowwise.Seurat | Group input by rows
sample_frac | Sample n rows from a table
sample_frac.Seurat | Sample n rows from a table
sample_n | Sample n rows from a table
sample_n.Seurat | Sample n rows from a table
select | Keep or drop columns using their names and types
select.Seurat | Keep or drop columns using their names and types
separate | Separate a character column into multiple columns with a regular expression or numeric locations
separate.Seurat | Separate a character column into multiple columns with a regular expression or numeric locations
slice | Subset rows using their positions
slice.Seurat | Subset rows using their positions
slice_head | Subset rows using their positions
slice_head.Seurat | Subset rows using their positions
slice_max | Subset rows using their positions
slice_max.Seurat | Subset rows using their positions
slice_min | Subset rows using their positions
slice_min.Seurat | Subset rows using their positions
slice_sample | Subset rows using their positions
slice_sample.Seurat | Subset rows using their positions
slice_tail | Subset rows using their positions
slice_tail.Seurat | Subset rows using their positions
summarise | Summarise each group down to one row
summarise.Seurat | Summarise each group down to one row
summarize | Summarise each group down to one row
summarize.Seurat | Summarise each group down to one row
tbl_format_header | Format the header of a tibble
tbl_format_header.tidySeurat | Format the header of a tibble
tidy | tidy for Seurat objects
tidy.Seurat | tidy for Seurat objects
unite | Unite multiple columns into one by pasting strings together
unite.Seurat | Unite multiple columns into one by pasting strings together
unnest | Unnest a list-column of data frames into rows and columns
unnest.tidyseurat_nested | Unnest a list-column of data frames into rows and columns
unnest_seurat | Unnest a list-column of data frames into rows and columns