tidyGenR-package	tidyGenR-package
add_allele_no	add_allele_no
align_matrices	align_matrices
amplisas2tidy	amplisas2tidy
check1_lowcount	check1_lowcount
check2_unique_snames	check2_unique_snames
check3_non_orphan	check3_non_orphan
check_raw_reads	check_raw_reads
chimera_removal	variant_calling_dada
compare_calls	compare_calls
cutadapt_command	cutadapt_command
dada2list	variant_calling_dada
demultiplex	demultiplex
dereplicate	dereplicate
dist_m	dist_m
dist_m_all	dist_m_all
explore_dada	explore_dada
filter_variants	filter_variants
filt_msa	filt_msa
genotype	genotype
genotypes	genotypes
genotype_conversion	genotype_conversion
geno_direct	genotype
gen_compact2wide	genotype_conversion
gen_tidy2compact	genotype_conversion
gen_tidy2genalex	genotype_conversion
gen_tidy2integers	genotype_conversion
gen_tidy2wide	genotype_conversion
gen_wide2structure	genotype_conversion
loess_err_mod4	variant_calling_dada
mds_comp	mds_comp
out_popart	out_popart
primers	primers
reads_loci_samples	reads_loci_samples
reads_track	reads_track
remove_hemizygotes	remove_hemizygotes
remove_monomorphic	remove_monomorphic
remove_poor_fastq	remove_poor_fastq
rename_alleles	rename_alleles
rm_n_msa	rm_n_msa
tidy2sequences	tidy2sequences
tidyGenR	tidyGenR-package
truncate	truncate
trunc_amp	truncate
trunc_fr	trunc_fr
variants	variants
variant_call	variant_call
variant_calling_dada	variant_calling_dada
variant_calls	variant_calls
variant_call_dada	variant_calling_dada
var_seq2len	var_seq2len
view_msa	view_msa
