andes                   Divergence-time estimation data for
                        cis-trans-Andean pairs
c_truncauchy            c_truncauchy: Estimate the c parameter for the
                        truncated cauchy L distribution to be used in
                        MCMCTree
concatNexus             concatNexus: Function for concatenation of
                        nexus matrices both morphological and molecular
conflate                conflate: Calculate the conflation of multiple
                        distributions pdfs, plot = TRUE, from, to, n,
                        add = FALSE
crossplot               crossplot: Plot the mean/median and HPD
                        interval bars for pairs of distributions
cynodontidae.posterior
                        Posterior samples for the family Cynodontidae
cynodontidae.prior      Prior samples for the family Cynodontidae
density_fun             density_fun: A way to represent distributions
                        to be conflated
fasta2nexus             fasta2nexus (deprecated): Function for
                        converting molecular alignments from fasta to
                        nexus format
findParams              Function for estimation of probability density
                        function parameters through quadratic
                        optimization
laventa                 Geochronology samples from the Honda Group in
                        Colombia
lognormalBeast          Constructing a curve for the user-specified
                        lognormal prior using Beast2 parameters
measureSimil            Calculate the Intersection Between Two
                        Densities
mswd.test               Reduced chi-square test or mean square weighted
                        deviation (mswd) test
quantile_conflation     quantile_conflation: Calculate the quantile for
                        a given probabiliy under a conflated
                        distribution
stratCI                 stratCI: Estimate the confidence intervals of
                        endpoints in stratigraphic intervals
summaryBrlen            summaryBrlen: Summarise branch lengths on trees
                        with identical topology
table2nexus             table2nexus: Read a data matrix in delimited
                        format and convert into a data matrix in nexus
                        format
tnt2newick              tnt2newick: Function for converting from TNT
                        tree format to newick parenthetical format
topoFreq                Frequency of topologies in a tree sample
xintercept              xintercept: Estimate the x-intercept of an
                        empirical cdf
