anatolian_trees         Anatolian Forest Trees: Multi-Site Species Data
avtd                    Average Taxonomic Distinctness (Delta+)
batch_analysis          Batch Analysis from a Single Data Frame
build_tax_tree          Build a Taxonomic Tree from Species Data
compare_indices         Compare All Diversity Indices Side by Side
delta                   Taxonomic Diversity Index (Delta)
delta_star              Taxonomic Distinctness (Delta*)
deng_entropy_level      Calculate Deng Entropy at a Single Taxonomic
                        Level
gazi_comm               Example Community Vector: 8 Anatolian Tree
                        Species
gazi_gytk               Example Taxonomy: 8 Anatolian Tree Species
ozkan_pto               Calculate Ozkan's Taxonomic Diversity Index
                        (pTO)
ozkan_pto_full          Full Ozkan pTO Pipeline (Islem 1 + 2 + 3)
ozkan_pto_jackknife     Jackknife Analysis for Ozkan's pTO Index (Islem
                        1 / Run 1)
ozkan_pto_resample      Stochastic Resampling of Ozkan's pTO Index
                        (Islem 2 / Run 2)
ozkan_pto_sensitivity   Sensitivity Analysis of Ozkan's pTO Index
                        (Islem 3 / Run 3)
plot_bubble             Bubble Chart of Species Contributions to
                        Diversity
plot_funnel             Funnel Plot for AvTD/VarTD
plot_heatmap            Plot Taxonomic Distance Heatmap
plot_iteration          Plot pTO Iteration Results from Run 2 or Run 3
plot_radar              Radar (Spider) Chart for Multi-Community Index
                        Comparison
plot_rarefaction        Plot Taxonomic Rarefaction Curve
plot_taxonomic_tree     Plot Taxonomic Tree as a Dendrogram
pto_components          Calculate All Eight pTO Components (Convenience
                        Wrapper)
rarefaction_taxonomic   Taxonomic Diversity Rarefaction
shannon                 Shannon Diversity Index
simpson                 Simpson Diversity Index
simulate_td             Simulate Expected AvTD/VarTD Under Random
                        Sampling
tax_distance_matrix     Compute Taxonomic Distance Matrix
vartd                   Variation in Taxonomic Distinctness (Lambda+)
