.libPaths2              .libpaths2
BiocDevel               BiocDevel
BiocRelease             BiocRelease
BiocSVNManifest         DEPCRECATED - Create a manifest of Bioc SVN
                        locations
BiocVers                BiocVers
GithubManifest          GithubManifest
ManifestRow             ManifestRow
PkgManifest             PkgManifest
PkgSource-class         PkgSource
RepoSubset              RepoSubset
SessionManifest         SessionManifest
SwitchrCtx              SwitchrCtx
SwitchrParam-class      SwitchrParam
addPkg                  addPkg
archive_retries         archive_retries
archive_timing          archive_timing
biocReposForVers        biocReposForVers
branch                  branch
c,SessionManifest-method
                        cmethods
checkIsPkgDir           Check if a directory contains package sources
cranPkgVersManifest     cranPkgVersManifest
currentCompEnv          currentCompEnv
defaultRepos            defaultRepos
dep_repos               dep_repos
dl_method               dl_method
errorOrNonZero          Identify error states from R or external
                        programs
fileFromFileURL         Get path from file URL
findNewestPkgInds       Find newest packages in a package info
                        data.frame
findPkgDir              Find a package directory within an SCM checkout
findPkgVersionInRepo    findPkgVersionInRepo
flushSession            flushSession
full_libpaths           full_libpaths
getPkgDir               Construct pockage directory path
gotoVersCommit          gotoVersCommit
graceful_inet           Internal internet harness
head                    Head and tail operations on manifests
install_packages        install_packages
lazyRepo                lazyRepo
libManifest             libManifest
library_paths           library_paths
loadGRAN                Load a GRAN repo package
loadManifest            loadManifest
locatePkgVersion        locatePkgVersion
location                location
logfun                  logfun
makeBiocSVNURL          Make a Bioconductor SVN url for a package
makeFileURL             make file url
makeLibraryCtx          makeLibraryCtx
makeManifest            Manifest constructor
makePkgCheckout         Create a checkout of a package and all it's
                        dependencies from a manifest
makePkgDir              makePkgDir
makeSeedMan             makeSeedMan
makeSource              Create a PkgSource object for a package
manifest                Get or set the manifest associated with an
                        object
manifestFromCheckoutDir
                        Create Manifest from 'checkedout' directory
                        containing many pkg dirs
manifest_df             manifest_df
normalizePath2          normalizePath2
notrack                 Notrack directory
nrow                    Number of rows
packages                packages
parseSessionInfoString
                        Parse text output from printing SessionInfo
                        objects
parsedSessionInfo-class
                        Parsed sessionInfo output
pkgname                 pkgname
publishManifest         publishManifest
rVersionManifest        rVersionManifest
removeLib               removeLib
sh_init_script          shell init
shell_timing            Get or set the number of seconds to wait
                        between successive shell commands
subdir                  subdir
switchBack              switchBack
switchDeps              switchrDeps
switchTo                switchTo
switchrBaseDir          Get or set the base directory for switchr
                        libraries
switchrDontUnload       Get or set packages to not unload when flushing
                        the system
switchrManifest         switchrManifest
switchrNoUnload         Skip unloading of packages in session
system_w_init           system_w_init
updateManifest          updateManifest
update_PACKAGES         update existing package repository
versions_df             versions_df
