R: Process Control and Validation of Forensic STR Kits

# Process Control and Validation of Forensic STR Kits

## Documentation for package ‘strvalidator’ version 2.4.2

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

A C D E F G H I L M P R S T

## -- A --

addColor | Add Color Information.
addData | Adds New Data Columns to a Data Frame
addData_gui | Add Data
addDye_gui | Add Dye Information
addMarker | Add Missing Markers.
addMarker_gui | Add Missing Markers
addOrder | Add Marker Order.
addSize | Add Size Information.
addSize_gui | Add Size Information
auditTrail | Log Audit Trail.

## -- C --

calculateAllele | Calculate Allele
calculateAllele_gui | Calculate Allele
calculateAllT | Calculate Stochastic Thresholds
calculateAllT_gui | Calculate Stochastic Thresholds
calculateAT | Calculate Analytical Threshold
calculateAT6 | Calculate Analytical Threshold
calculateAT6_gui | Calculate Analytical Threshold
calculateAT_gui | Calculate Analytical Threshold
calculateCapillary | Calculate Capillary Balance
calculateCapillary_gui | Calculate Capillary Balance
calculateConcordance | Calculate Concordance.
calculateConcordance_gui | Calculate Concordance
calculateCopies | Calculate Allele Copies
calculateCopies_gui | Calculate Allele Copies
calculateDropout | Calculate Drop-out Events
calculateDropout_gui | Calculate Dropout Events
calculateHb | Calculate Heterozygote Balance
calculateHb_gui | Calculate Heterozygote Balance
calculateHeight | Calculate Peak Height.
calculateHeight_gui | Calculate Peak Height
calculateLb | Calculate Inter-locus Balance
calculateLb_gui | Calculate Locus Balance
calculateMixture | Calculate Mixture.
calculateMixture_gui | Calculate Mixture
calculateOL | Analyze Off-ladder Alleles
calculateOL_gui | Analyze Off-ladder Alleles
calculateOverlap | Calculate Bins Overlap
calculateOverlap_gui | Calculate Bins Overlap
calculatePeaks | Calculate Peaks
calculatePeaks_gui | Calculate Peaks
calculatePullup | Calculate Spectral Pull-up
calculatePullup_gui | Calculate Spectral Pull-up
calculateRatio | Calculate Ratio
calculateRatio_gui | Calculate Ratio
calculateResultType | Calculate Result Type
calculateResultType_gui | Calculate Result Type
calculateSlope | Calculate Profile Slope.
calculateSlope_gui | Calculate Profile Slope
calculateSpike | Detect Spike
calculateSpike_gui | Detect Spike
calculateStatistics | Summary Statistics
calculateStatistics_gui | Calculate Statistics
calculateStutter | Calculate Stutter
calculateStutter_gui | Calculate Stutter
calculateT | Calculate Stochastic Threshold
checkDataset | Check Dataset
checkSubset | Check Subset
checkSubset_gui | Check Subset
colConvert | Convert Columns
colNames | Column Names
columns | Column Actions
columns_gui | Column Actions
combineBinsAndPanels | Combine Bins And Panels Files.
combine_gui | Combine Datasets
cropData_gui | Crop Or Replace

## -- D --

detectKit | Detect Kit

## -- E --

editData_gui | Edit or View Data Frames
export | Export
export_gui | Export

## -- F --

filterProfile | Filter Profile
filterProfile_gui | Filter Profile

## -- G --

generateEPG | Generate EPG
generateEPG_gui | Generate EPG
getKit | Get Kit
getSetting | Get Settings.
getStrings | Get Language Strings
ggsave_gui | Save Image
guessProfile | Guess Profile
guessProfile_gui | Guess Profile

## -- H --

heightToPeak | Height To Peak.

## -- I --

import | Import Data
import_gui | Import Data

## -- L --

listObjects | List Objects

## -- M --

makeKit_gui | Make Kit
maskAT | Mask And Prepare Data To Analyze Analytical Threshold
modelDropout_gui | Model And Plot Drop-out Events

## -- P --

plotAT_gui | Plot Analytical Threshold
plotBalance_gui | Plot Balance
plotCapillary_gui | Plot Capillary Balance
plotContamination_gui | Plot Contamination
plotDistribution_gui | Plot Distribution
plotDropout_gui | Plot Drop-out Events
plotEPG2 | plotEPG2
plotEPG2_gui | Plot EPG
plotGroups_gui | Plot Empirical Cumulative Distributions
plotKit_gui | Plot Kit Marker Ranges
plotPeaks_gui | Plot Peaks
plotPrecision_gui | Plot Precision
plotPullup_gui | Plot Pull-up
plotRatio_gui | Plot Ratio
plotResultType_gui | Plot Result Type
plotSlope_gui | Plot Profile Slope
plotStutter_gui | Plot Stutter

## -- R --

ref1 | ESX17 Positive Control Profile
ref11 | ESX17 Positive Control Profile
ref2 | SGMPlus example data
ref3 | ESX17 example data for dropout analysis.
ref4 | ESX17 example data for dropout analysis.
ref51 | ESX17 example data for mixture analysis.
ref52 | ESX17 example data for mixture analysis.
ref61 | Fusion example data for dropout analysis.
ref62 | Fusion example data for dropout analysis.
ref7 | ESSplex SE QS example data for inhibition analysis.
removeArtefact | Remove Artefacts
removeArtefact_gui | Remove Artefact
removeSpike | Remove Spikes
removeSpike_gui | Remove Spike

## -- S --

sample_tableToList | sample_tableToList
scrambleAlleles | Scramble Alleles
set1 | Typing data in 'GeneMapper' format
set2 | SGMPlus example data
set3 | ESX17 example data for dropout analysis.
set4 | ESX17 example data for dropout analysis.
set5 | ESX17 example data for mixture analysis.
set6 | Fusion example data for dropout analysis.
set7 | ESSplex SE QS example data for inhibition analysis.
slim | Slim Data Frames
slim_gui | Slim Data Frames
sortMarker | Sort Markers
strvalidator | Graphical User Interface For The STR-validator Package

## -- T --

trim | Trim Data
trim_gui | Trim Data