R: Striped Smith-Waterman Algorithm for Sequence Alignment using SIMD

# Striped Smith-Waterman Algorithm for Sequence Alignment using SIMD

## Documentation for package ‘ssw’ version 0.2.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

align | Perform Smith-Waterman alignment of a read against a reference sequence
force_align | Perform forced alignment with increased gap open penalty
formatter | Format and pretty-print SSW forced alignment results without truncation
install_ssw_py | Install ssw-py and its dependencies
is_installed_ssw_py | Is ssw-py installed?
print.ssw | Print SSW alignment results
ssw_py | Global reference to ssw-py