ag.test                 Test of Purine-Pyrimidine Parity Based on
                        Purine Count
agct.test               Test of Purine-Pyrimidine Parity Based on
                        Euclidean distance
array2vector            Convert Arrays and Tables to Vectors with Named
                        Elements
chargaff.gibbs.test     Test of CSPR for Dinucleotides Under Gibbs
                        Distribution
chargaff0.test          Vector Test of Chargaff's Second Parity Rule
                        (CSPR) for Mononucleotides
chargaff1.test          Matrix Test of CSPR for Mononucleotides
chargaff2.test          Matrix Test of CSPR for Dinucleotides
chisq.unif.test         Test of Uniformity Based on Pearsons's
                        Chi-Squared test
complement              Complement of a DNA/RNA Sequence
cylinder.counts         Count Cylinders (Fixed-Offset Patterns) in
                        Character Vectors
diffsign.test           the Differents-Sign Test of Statistical
                        Independence
diid.disturbance        Construct feasible Random Noise Generating a
                        Bernoulli Process
diid.test               A Test for a Bernoulli Scheme (IID Sequence)
disambiguate            Disambiguate a Nucleic Sequence
estimateMarkovChain     Fit a first-Order Markov Chain to a Sequence of
                        Finite Symbols
ks.unif.test            Using 'ks.test' to test for Uniformity on the
                        Unit Interval
lb.test                 The Ljung-Box Test for Uncorrelated Data
markov.disturbance      Construct feasible Random Noise Generating a
                        First-Order Markov Chain
markov.test             A Test for First-Order Markovianness
nanoarchaeum            DNA sequence for the Nanoarchaeum equitans
                        Kin4-M Chromosome
oligoProfile            Oligo Profiles and Oligo Profile Correlation
                        Plots of Nucleotide Sequences
pair.counts             Count Pairs in Character Vectors
pieris                  DNA sequence for the Pieris Rapae Granulovirus
                        Genome
quadruple.counts        Count Quadruplets in Character Vectors
rank.test               The Rank Test of Statistical Independence
rcspr2mat               Random Stochastic Matrices Complying with
                        Chargaff's Second Parity Rule for Dinucleotides
reverseComplement       Reverse Complement of a DNA/RNA Sequence
rstochmat               Random Generation of Stochastic Matrices
rstochvec               Random Generation of Stochastic (Probability)
                        Vectors
simulateMarkovChain     Simulate a first-Order Markov Chain
spgs-package            Statistical Patterns in Genomic Sequences
triple.counts           Count Triplets in Character Vectors
turningpoint.test       The Turning Point Test of Statistical
                        Independence
