R: Spectral Network Quantitative Trait Loci (snQTL) Analysis

# Spectral Network Quantitative Trait Loci (snQTL) Analysis

## Documentation for package ‘snQTL’ version 0.2

- DESCRIPTION file

## Help Pages

as.tensor | Tensor Conversion
BinarySearch | Search soft threshold
cs_unfold | Tensor Column Space Unfolding
cs_unfold-method | Tensor Column Space Unfolding
cs_unfold-methods | Tensor Column Space Unfolding
diffnet_to_snQTL_stats | Test statistics for snQTL
dim-method | Mode Getter for Tensor
dim-methods | Mode Getter for Tensor
fold | General Folding of Matrix
get_diffnet_from_exp | The differential matrix
get_diffnet_list_from_exp | Get the list of differential matrix from a list of expression data
kronecker_list | List Kronecker Product
l2n | L2 norm for vector
Ops-method | Conformable elementwise operators for Tensor
Ops-methods | Conformable elementwise operators for Tensor
rand_tensor | Tensor with Random Entries
rs_unfold | Tensor Row Space Unfolding
rs_unfold-method | Tensor Row Space Unfolding
rs_unfold-methods | Tensor Row Space Unfolding
single_exp_to_snQTL_stats | Generate one single snQTL test statistics from expression data
sLME | Calculate of sLME for matrices
snQTL_test_corrnet | Spectral network quantitative trait loci (snQTL) test
soft | Soft threshold
solvePMD | Solving symmetric Penalized Matrix Decomposition
SSTD_R1 | Sparse Symmetric Tensor Decomposition (SSTD)
symmPMD | Symmetric Penalized Matrix Decomposition.
Tensor | S4 Class for a Tensor
Tensor-class | S4 Class for a Tensor
ttl | Tensor Times List
ttm | Tensor Matrix Product (m-Mode Product)
unfold | Tensor Unfolding
unfold-method | Tensor Unfolding
unfold-methods | Tensor Unfolding