findDampFactor          findDampFactor
seqfishplus             SeqFISHplus dataset
smfishHmrf              smfishHmrf: A package for running hidden markov
                        random field on smFISH and other spatial
                        transcriptomic datasets
smfishHmrf.generate.centroid
                        Generate cluster centroids, where input is
                        given as a matrix.
smfishHmrf.generate.centroid.it
                        Generate cluster centroids, where input is a
                        file.
smfishHmrf.generate.centroid.save
                        Save the cluster centroids to file
smfishHmrf.generate.centroid.use.exist
                        Use existing cluster centroids
smfishHmrf.hmrfem.multi
                        Performs HMRF for multivariate normal
                        distribution. Accepts R data structures as
                        inputs. Accepts a single beta.
smfishHmrf.hmrfem.multi.it
                        Perform HMRF for multivariate normal
                        distribution. Accepts R data structures as
                        inputs. Accepts multiple betas.
smfishHmrf.hmrfem.multi.it.min
                        Perform HMRF on multivariate normal
                        distributions. Accepts file names as inputs.
                        Accepts multiple betas.
smfishHmrf.hmrfem.multi.save
                        Save the HMRF result
smfishHmrf.read.expression
                        smfishHmrf.read.expression
