R: Flexible Multidimensional Scaling and 'smacof' Extensions

# Flexible Multidimensional Scaling and 'smacof' Extensions

## Documentation for package ‘smacofx’ version 1.22-0

- DESCRIPTION file
- Package NEWS

## Help Pages

alignplot | Function to plot Procrustes aligned MDS configurations
alscal | ALSCAL - MDS via S-Stress Minimization
apostmds | Approximate Power Stress MDS
apowerstressMin | Approximate Power Stress MDS
apstressmds | Approximate Power Stress MDS
apStressMin | Approximate Power Stress MDS
apstressMin | Approximate Power Stress MDS
BankingCrisesDistances | Banking Crises Distances
bcmds | Box-Cox MDS
bcsdistance | Calculates the blended Chi-square distance matrix between n vectors
bcStressMin | Box-Cox MDS
bcstressMin | Box-Cox MDS
biplotmds.bcmds | S3 method for bcmds objects
biplotmds.lmds | S3 method for lmds objects
biplotmds.smacofP | S3 method for smacofP objects
bootmds.smacofP | MDS Bootstrap for smacofP objects
boxcoxmds | Box-Cox MDS
clca | Curvilinear Component Analysis (CLCA)
clda | Curvilinear Distance Analysis (CLDA)
cmds | Classical Scaling
cmdscale | Wrapper to 'cmdscale' for S3 class
conf_adjust | conf_adjust: a function to procrustes adjust two matrices
corpsepaint | Corpse Paint
doubleCenter | Double centering of a matrix
eCLCA | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
eclca | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
eCLDA | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
eclda | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
eCLPCA | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
eclpca | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
eCLPDA | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
eclpda | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
elscal | Elastic Scaling SMACOF
enorm | Explicit Normalization Normalizes distances
icExploreGen | Exploring initial configurations in an agnostic way
jackmds.smacofP | MDS Jackknife for smacofP objects
koller | Responses to the SCC scale and CSII scale (n=1013).
lmds | Local MDS
mkBmat | Auxfunction1
mkPower | Take matrix to a power
multiscale | Multiscale SMACOF
multistart | Multistart MDS function
opmds | Nonlinear ratio MDS with optimal power of dissimilarities
pdist | Squared p-distances
permtest.smacofP | Permutation test for smacofP objects
plot.smacofP | S3 plot method for smacofP objects
postmds | Power Stress SMACOF
powerStressFast | Power stress minimization by NEWUOA (nloptr)
powerStressMin | Power Stress SMACOF
powerstressMin | Power Stress SMACOF
procruster | procruster: a procrustes function
pstressmds | Power Stress SMACOF
pStressMin | Power Stress SMACOF
pstressMin | Power Stress SMACOF
ringdat | Two interlocking rings
rpostmds | Restricted Power Stress SMACOF
rpowerStressMin | Restricted Power Stress SMACOF
rpowerstressMin | Restricted Power Stress SMACOF
rpstressmds | Restricted Power Stress SMACOF
rpStressMin | Restricted Power Stress SMACOF
rpstressMin | Restricted Power Stress SMACOF
rstress | R stress SMACOF
rstressmds | R stress SMACOF
rStressMin | R stress SMACOF
rstressMin | R stress SMACOF
sammon | Wrapper to 'sammon' for S3 class
sammonmap | Sammon Mapping SMACOF
scale_adjust | Adjusts a configuration
secularEq | Secular Equation
smacofxDeleteOne | Helper function to conduct jackknife MDS
smdda | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
smds | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
so_eCLCA | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
so_eclca | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
so_eCLDA | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
so_eclda | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
so_eCLPCA | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
so_eclpca | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
so_eCLPDA | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
so_eclpda | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
so_smdda | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
so_smds | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
so_spmdda | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
so_spmds | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
spheredat | Clelia curve on a sphere
spmdda | Extended Curvilinear (Power) Distance Analysis (eCLPDA or eCLDA) aka Sparse (POST-)Multidimensional Distance Analysis (SPMDDA or SMDDA) either as self-organizing or not
spmds | Extended Curvilinear (Power) Component Analysis aka Sparsified (POST-) Multidimensional Scaling (SPMDS or SMDS) either as self-organizing or not
spp | Calculating stress per point
sqdist | Squared distances
udat | Noisy Data on a U Fold