R: Predict Presence of Signal Peptides

# Predict Presence of Signal Peptides

## Documentation for package ‘signalHsmm’ version 1.5

- DESCRIPTION file
- Package README

## Help Pages

signalHsmm-package | signalHsmm - prediction of signal peptides
aaaggregation | Reduced amino acid alphabet
add_k_mer_state | Adds k-mer hidden state to signalHsmm model
benchmark_dat | Benchmark data set for signalHsmm
duration_viterbi | Compute most probable path with extended Viterbi algorithm.
find_nhc | Localize n-, h- and c-region in signal peptide
gui_signalHsmm | GUI for signalHsmm
hsmm_pred | hsmm_pred class
hsmm_pred_list | hsmm_pred_list class
is_protein | Protein test
plot.hsmm_pred | Plot single signalHsmm prediction
pred2df | Convert list of signalHsmm predictions
predict.sighsmm_model | Predict sighsmm_model object
read_txt | Read sequences from .txt file
read_uniprot | Read data from UniProt database
run_signalHsmm | Predict presence of signal peptide in protein
signalHsmm | signalHsmm - prediction of signal peptides
summary.hsmm_pred | Summarize single signalHsmm prediction
summary.hsmm_pred_list | Summarize list of signalHsmm predictions
train_hsmm | Train sighsmm_model object