aaaggregation           Reduced amino acid alphabet
add_k_mer_state         Adds k-mer hidden state to signalHsmm model
benchmark_dat           Benchmark data set for signalHsmm
duration_viterbi        Compute most probable path with extended
                        Viterbi algorithm.
find_nhc                Localize n-, h- and c-region in signal peptide
gui_signalHsmm          GUI for signalHsmm
hsmm_pred               hsmm_pred class
hsmm_pred_list          hsmm_pred_list class
is_protein              Protein test
plot.hsmm_pred          Plot single signalHsmm prediction
pred2df                 Convert list of signalHsmm predictions
predict.sighsmm_model   Predict sighsmm_model object
read_txt                Read sequences from .txt file
read_uniprot            Read data from UniProt database
run_signalHsmm          Predict presence of signal peptide in protein
signalHsmm              signalHsmm - prediction of signal peptides
summary.hsmm_pred       Summarize single signalHsmm prediction
summary.hsmm_pred_list
                        Summarize list of signalHsmm predictions
train_hsmm              Train sighsmm_model object
