Package: seqgendiff
Type: Package
Title: RNA-Seq Generation/Modification for Simulation
Version: 1.2.4
Authors@R: person("David", "Gerard", email = "gerard.1787@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9450-5023"))
Description: Generates/modifies RNA-seq data for use in simulations. We provide
    a suite of functions that will add a known amount of signal to a real 
    RNA-seq dataset. The advantage of using this approach over simulating under
    a theoretical distribution is that common/annoying aspects of the data
    are more preserved, giving a more realistic evaluation of your method. 
    The main functions are select_counts(), thin_diff(), thin_lib(), 
    thin_gene(), thin_2group(), thin_all(), and effective_cor(). See
    Gerard (2020) <doi:10.1186/s12859-020-3450-9> for details on the
    implemented methods.
License: GPL-3
Encoding: UTF-8
URL: https://github.com/dcgerard/seqgendiff
BugReports: https://github.com/dcgerard/seqgendiff/issues
RoxygenNote: 7.3.1
Suggests: covr, testthat (>= 2.1.0), SummarizedExperiment, DESeq2,
        knitr, rmarkdown, airway, limma, qvalue, edgeR
Imports: assertthat, irlba, sva, pdist, matchingR, clue
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-05-15 10:10:51 UTC; dgerard
Author: David Gerard [aut, cre] (<https://orcid.org/0000-0001-9450-5023>)
Maintainer: David Gerard <gerard.1787@gmail.com>
Repository: CRAN
Date/Publication: 2024-05-15 13:00:02 UTC
Built: R 4.6.0; ; 2026-04-27 20:10:09 UTC; unix
