biofam3c                Three-channel biofam data
bootstrap_coefs         Bootstrap Sampling of NHMM Coefficients
build_hmm               Build a Hidden Markov Model
build_lcm               Build a Latent Class Model
build_mhmm              Build a Mixture Hidden Markov Model
build_mm                Build a Markov Model
build_mmm               Build a Mixture Markov Model
cluster_names           Get Cluster Names from Mixture HMMs
cluster_names<-         Set Cluster Names for Mixture Models
coef.nhmm               Get the Estimated Regression Coefficients of
                        Non-Homogeneous Hidden Markov Models
colorpalette            Color palettes
data_to_stslist         Transform TraMineR's state sequence object to
                        data.table and vice versa
estimate_mnhmm          Estimate a Mixture Non-homogeneous Hidden
                        Markov Model
estimate_nhmm           Estimate a Non-homogeneous Hidden Markov Model
fanhmm_leaves           A feedback-augmented non-homogeneous hidden
                        Markov Model for leaves data
fit_model               Estimate Parameters of (Mixture) Hidden Markov
                        Models and Their Restricted Variants
forward_backward        Forward and Backward Probabilities for Hidden
                        Markov Model
get_cluster_probs       Extract the Prior Cluster Probabilities of MHMM
                        or MNHMM
get_emission_probs      Extract the Emission Probabilities of Hidden
                        Markov Model
get_initial_probs       Extract the Initial State Probabilities of
                        Hidden Markov Model
get_marginals           Compute the Marginal Probabilities from NHMMs
get_transition_probs    Extract the State Transition Probabilities of
                        Hidden Markov Model
gridplot                Plot Multidimensional Sequence Plots in a Grid
hidden_paths            Most Probable Paths of Hidden States
hmm_biofam              Hidden Markov model for the biofam data
hmm_mvad                Hidden Markov model for the mvad data
leaves                  Synthetic data on fathers' parental leaves in
                        Finland
logLik.hmm              Log-likelihood of a Hidden Markov Model
logLik.nhmm             Log-likelihood of a Non-homogeneous Hidden
                        Markov Model
mc_to_sc                Transform a Multichannel Hidden Markov Model
                        into a Single Channel Representation
mc_to_sc_data           Merge Multiple Sequence Objects into One (from
                        Multichannel to Single Channel Data)
mhmm_biofam             Mixture hidden Markov model for the biofam data
mhmm_mvad               Mixture hidden Markov model for the mvad data
most_probable_cluster   Extract Most Probable Cluster for Each Sequence
mssplot                 Interactive Stacked Plots of Multichannel
                        Sequences and/or Most Probable Paths for
                        Mixture Hidden Markov Models
nobs.hmm                Number of Observations in Hidden Markov Model
permute_states          Permute the states of NHMM using Hungarian
                        algorithm
plot.hmm                Plot hidden Markov models
plot.mhmm               Interactive Plotting for Mixed Hidden Markov
                        Model (mhmm)
plot.ssp                Stack Multichannel Sequence Plots and/or Most
                        Probable Paths Plots from Hidden Markov Models
plot_colors             Plot Colorpalettes
posterior_cluster_probabilities
                        Extract Posterior Cluster Probabilities
posterior_probs         Posterior Probabilities for Hidden Markov
                        Models
predict.nhmm            Predictions from Non-homogeneous Hidden Markov
                        Models
print.hmm               Print Method for a Hidden Markov Model
return_msg              Convert return code from estimate_nhmm and
                        estimate_mnhmm to text
separate_mhmm           Reorganize a mixture hidden Markov model to a
                        list of separate hidden Markov models
                        (covariates ignored)
seqHMM-deprecated       Deprecated function(s) in the seqHMM package
seqHMM-package          The seqHMM package
simulate_hmm            Simulate hidden Markov models
simulate_initial_probs
                        Simulate Parameters of Hidden Markov Models
simulate_mhmm           Simulate Mixture Hidden Markov Models
simulate_mnhmm          Simulate Mixture Non-homogeneous Hidden Markov
                        Models
simulate_nhmm           Simulate Non-homogeneous Hidden Markov Models
sort_sequences          Sort sequences in a sequence object
ssp                     Define Arguments for Plotting Multichannel
                        Sequences and/or Most Probable Paths from
                        Hidden Markov Models
ssplot                  Stacked Plots of Multichannel Sequences and/or
                        Most Probable Paths from Hidden Markov Models
stacked_sequence_plot   Stacked Sequence Plots of Multichannel
                        Sequences and/or Most Probable Paths from
                        Hidden Markov Models
state_names             Get State Names of Hidden Markov Model
summary.mhmm            Summary method for mixture hidden Markov models
summary.mnhmm           Summary method for mixture non-homogenous
                        hidden Markov models
trim_model              Trim Small Probabilities of Hidden Markov Model
update.nhmm             Update Covariate Values of NHMM
vcov.mhmm               Variance-Covariance Matrix for Coefficients of
                        Covariates of Mixture Hidden Markov Model
