R: Enable Cross-Study Analysis of 'CDISC' 'SEND' Datasets

# Enable Cross-Study Analysis of 'CDISC' 'SEND' Datasets

## Documentation for package ‘sendigR’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

dbCreateIndexes | Create indexes in SEND database
dbCreateSchema | Create a SEND schema in an open and empty database
dbDeleteStudies | Delete one or more studies in SEND database
dbImportOneStudy | Import SEND study data in SAS xport format into a SEND database from a single study folder
dbImportStudies | Import SEND study data in SAS xport format into a SEND database from a hierarchy study folders.
disconnectDB | Disconnect from the open database.
execSendDashboard | Execute sendDashboard app
genericQuery | Execute database query and returns fetched rows.
gen_vocab | Create json file for vocabulary mappings. Keys are synonyms and values are the CDISC Controlled Terminology Submission values. Vocabularies are defined by column values from the tab-delimited files.
getControlSubj | Extract a list of control animals for a list of studies
getFindingsPhase | Extract a set of findings for a specified study phase - or just add phase for each animal.
getFindingsSubjAge | Add the subject age at finding time - and optionally extract the set of findings within a specified range of age.
getStudiesSDESIGN | Extract a list of SEND studies with a specified study design - or just add actual study design for each study.
getStudiesSTSTDTC | Extract a list of SEND studies with study start date within a specified interval - or just add actual study start date for each study
getSubjData | Extract data from a subject level domain.
getSubjRoute | Extract the set of animals of the specified route of administration - or just add actual route of administration for each animal.
getSubjSex | Extract the set of animals of the specified sex - or just add the sex of each animal.
getSubjSpeciesStrain | Extract the set of animals of the specified species and strain - or just add the species and strain for each animal.
getTabColLabels | Get labels for columns in a data.table
initEnvironment | Initialize the environment.
standardize_file | Standardizes SEND xpt files using CDISC controlled terminologies