Package: searchAnalyzeR
Type: Package
Title: Advanced Analytics and Testing Framework for Systematic Review
        Search Strategies
Version: 0.1.0
Date: 2025-08-12
Authors@R: 
    person("Chao Liu", 
           email = "chaoliu@cedarville.edu", 
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-9979-8272"))
Description: Provides comprehensive analytics, reporting, and testing capabilities 
    for systematic review search strategies. The package focuses on validating search 
    performance, generating standardized 'PRISMA'-compliant reports, and ensuring 
    reproducibility in evidence synthesis. Features include precision-recall analysis, 
    cross-database performance comparison, benchmark validation against gold standards, 
    sensitivity analysis, temporal coverage assessment, automated report generation,
    and statistical comparison of search strategies. Supports multiple export formats 
    including 'CSV', 'Excel', 'RIS', 'BibTeX', and 'EndNote'. Includes tools for duplicate 
    detection, search strategy optimization, cross-validation frameworks, meta-analysis 
    of benchmark results, power analysis for study design, and reproducibility package 
    creation. Optionally connects to 'PubMed' for direct database searching and real-time 
    strategy comparison using the 'E-utilities' 'API'. Enhanced with bootstrap comparison 
    methods, 'McNemar' test for strategy evaluation, and comprehensive visualization tools 
    for performance assessment. Methods based on Manning et al. (2008) 
    for information retrieval metrics, Moher et al. (2009)
    for 'PRISMA' guidelines, and Sampson et al. (2006) for 
    systematic review search methodology.
License: GPL-3
URL: https://github.com/chaoliu-cl/searchAnalyzeR
BugReports: https://github.com/chaoliu-cl/searchAnalyzeR/issues
Encoding: UTF-8
Language: en-US
RoxygenNote: 7.3.2
Depends: R (>= 4.1.0)
Imports: R6 (>= 2.5.0), ggplot2 (>= 3.4.0), openxlsx (>= 4.2.5),
        stringdist (>= 0.9.10), lubridate (>= 1.9.0), digest (>=
        0.6.31), stats, utils
Suggests: testthat (>= 3.0.0), covr (>= 3.6.0), dplyr (>= 1.1.0), shiny
        (>= 1.7.0), shinydashboard (>= 0.7.2), flexdashboard (>=
        0.6.0), plotly (>= 4.10.0), DT (>= 0.27), boot (>= 1.3-28), pwr
        (>= 1.3-0), progress (>= 1.2.2), rmarkdown (>= 2.20), knitr (>=
        1.42), glue (>= 1.6.0), rentrez (>= 1.2.3), xml2 (>= 1.3.0),
        readr (>= 2.1.0), jsonlite (>= 1.8.0), revtools, tidyr,
        patchwork, metagear
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-08-24 02:02:14 UTC; chaoliu
Author: Chao Liu [aut, cre] (ORCID: <https://orcid.org/0000-0002-9979-8272>)
Maintainer: Chao Liu <chaoliu@cedarville.edu>
Repository: CRAN
Date/Publication: 2025-08-28 13:10:02 UTC
Built: R 4.6.0; ; 2026-04-28 10:41:59 UTC; unix
