R: Analysis of High-Dimensional Categorical Data Such as SNP Data

# Analysis of High-Dimensional Categorical Data Such as SNP Data

## Documentation for package ‘scrime’ version 1.3.7

- DESCRIPTION file

## Help Pages

abf | Approximate Bayes Factor
analyse.models | Summarize MCMC sample of Bayesian logic regression models
buildSNPannotation | Construct Annotation for Affymetrix SNP Chips
cohen | Simple Matching Coefficient and Cohen's Kappa
colEpistatic | Cordell's Test for Epistatic Interactions
computeContCells | Pairwise Contingency Tables
computeContClass | Rowwise Contigency Tables
fblr | Full Bayesian Logic Regression for SNP Data
fblr.weight | Full Bayesian Logic Regression for SNP Data
getMatFuzzy | Trend Test for Fuzzy Genotype Calls
gknn | Generalized k Nearest Neighbors
identifyMonomorphism | Identification of Constant Variables
knncatimpute | Missing Value Imputation with kNN
knncatimputeLarge | Missing Value Imputation with kNN for High-Dimensional Data
pamCat | Prediction Analysis of Categorical Data
pcc | Pearson's Contingency Coefficient
predict.pamCat | Predict Method for pamCat Objects
predictFBLR | Predict Case Probabilities with Full Bayesian Logic Regression
print.colEpi | Cordell's Test for Epistatic Interactions
print.pamCat | Prediction Analysis of Categorical Data
print.simSNPcatResponse | Simulation of SNP Data with Categorical Response
recodeAffySNP | Recoding of Affymetrix SNP Values
recodeSNPs | Recoding of SNP Values
rowCATTs | Rowwise Cochran-Armitage Trend Test Based on Tables
rowChisq2Class | Rowwise Pearson's ChiSquare Test Based on Tables
rowChisqMultiClass | Rowwise Pearson's ChiSquare Test Based on Tables
rowChisqStats | Rowwise Pearson's ChiSquare Statistic
rowCors | Rowwise Correlation with a Vector
rowEpistatic | Cordell's Test for Epistatic Interactions
rowFreqs | Rowwise Frequencies
rowHWEs | Rowwise Test for Hardy-Weinberg Equilibrium
rowMAFs | Rowwise Minor Allele Frequency
rowMsquares | Rowwise Linear Trend Test Based on Tables
rowScales | Rowwise Scaling
rowTables | Rowwise Tables
rowTrendFuzzy | Trend Test for Fuzzy Genotype Calls
rowTrendStats | Rowwise Linear Trend Tests
shortenGeneDescription | Shorten the Gene Description
showChanges | Displaying Changes
simulateSNPcatResponse | Simulation of SNP Data with Categorical Response
simulateSNPglm | Simulation of SNP data
simulateSNPs | Simulation of SNP data
smc | Simple Matching Coefficient and Cohen's Kappa
snp2bin | Transformation of SNPs to Binary Variables
summary.simSNPglm | Summarizing a simSNPglm object