Package: scregclust
Title: Reconstructing the Regulatory Programs of Target Genes in
        scRNA-Seq Data
Version: 0.2.4
Authors@R: c(
    person("Felix", "Held", ,"felix.held@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7679-7752")),
    person("Ida", "Larsson", ,"ida.larsson@igp.uu.se", role = c("aut"),
           comment = c(ORCID = "0000-0001-5422-4243")),
    person("Sven", "Nelander", ,"sven.nelander@igp.uu.se", role = c("aut"),
           comment = c(ORCID = "0000-0003-1758-1262")),
    person("André", "Armatowski", role = c("ctb")))
Description: Implementation of the scregclust algorithm
  described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
  which reconstructs regulatory programs of target genes in scRNA-seq data.
  Target genes are clustered into modules and each module is associated with a linear
  model describing the regulatory program.
Encoding: UTF-8
Depends: R (>= 4.1.0)
Imports: Matrix, stats, methods, utils, reshape, igraph, graphics,
        grid, cli, prettyunits, ggplot2, rlang, Rcpp (>= 1.0.8)
Suggests: testthat (>= 3.0.0), quarto, Seurat (>= 5.0.0), hdf5r,
        glmGamPoi, GEOquery
LinkingTo: Rcpp, RcppEigen
RoxygenNote: 7.3.3
License: GPL (>= 3)
Config/testthat/edition: 3
URL: https://scmethods.github.io/scregclust/,
        https://github.com/scmethods/scregclust/
BugReports: https://github.com/scmethods/scregclust/issues
Config/Needs/website: quarto
NeedsCompilation: yes
Packaged: 2026-04-05 22:02:46 UTC; felixheld
Author: Felix Held [aut, cre] (ORCID: <https://orcid.org/0000-0002-7679-7752>),
  Ida Larsson [aut] (ORCID: <https://orcid.org/0000-0001-5422-4243>),
  Sven Nelander [aut] (ORCID: <https://orcid.org/0000-0003-1758-1262>),
  André Armatowski [ctb]
Maintainer: Felix Held <felix.held@gmail.com>
Repository: CRAN
Date/Publication: 2026-04-05 22:50:02 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-28 10:38:42 UTC; unix
Archs: scregclust.so.dSYM
