Package: scistreer
Title: Maximum-Likelihood Perfect Phylogeny Inference at Scale
URL: https://github.com/kharchenkolab/scistreer,
        https://kharchenkolab.github.io/scistreer/
Version: 1.2.1
Authors@R: c(person("Teng","Gao", email="tgaoteng@gmail.com", role=c("cre", "aut")), person("Evan", "Biederstedt", email="evan.biederstedt@gmail.com", role="aut"), person("Peter", "Kharchenko", email = "peter_kharchenko@hms.harvard.edu", role = "aut"), person("Yufeng", "Wu", email = "yufeng.wu@uconn.edu", role = "aut"))
Description: Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1.0)
biocViews:
Imports: ape, dplyr, ggplot2, ggtree, igraph, parallelDist, patchwork,
        phangorn, Rcpp, reshape2, RcppParallel, RhpcBLASctl, stringr,
        tidygraph
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
LinkingTo: Rcpp, RcppArmadillo, RcppParallel
NeedsCompilation: yes
SystemRequirements: GNU make
Author: Teng Gao [cre, aut],
  Evan Biederstedt [aut],
  Peter Kharchenko [aut],
  Yufeng Wu [aut]
Maintainer: Teng Gao <tgaoteng@gmail.com>
RoxygenNote: 7.2.2
Packaged: 2026-02-04 19:25:51 UTC; ch259396
Repository: CRAN
Date/Publication: 2026-02-05 06:10:10 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-29 23:02:46 UTC; unix
Archs: scistreer.so.dSYM
