DeconRNAseq_CRAN        DeconRNASeq CRAN compatible
PBMC_example            PBMC_scMappR
POA_example             Preoptic_Area
cellmarker_enrich       Fisher's Exact Cell-Type Identification.
coEnrich                Identify co-expressed cell-types
compare_deconvolution_methods
                        compare_deconvolution_methods
cwFoldChange_evaluate   Measure cell-type specificity of cell-weighted
                        Fold-changes
deconvolute_and_contextualize
                        Generate cell weighted Fold-Changes
                        (cwFold-changes)
extract_genes_cell      Extract Markers
gProfiler_cellWeighted_Foldchange
                        Pathway enrichment for cwFold-changes
generes_to_heatmap      Generate signature matrix
get_gene_symbol         Internal - get gene symbol from Panglao.db
                        assigned gene-names (symbol-ensembl).
get_signature_matrices
                        Get signature matrices.
gmt                     gmt_example
gsva_cellIdentify       Cell-type naming with GSVA
heatmap_generation      Generate Heatmap
human_mouse_ct_marker_enrich
                        Consensus cell-type naming (Fisher's Exact)
make_TF_barplot         Plot g:profileR Barplot (TF)
pathway_enrich_internal
                        Internal - Pathway enrichment for
                        cellWeighted_Foldchanges and bulk gene list
plotBP                  Plot gProfileR Barplot
process_dgTMatrix_lists
                        Count Matrix To Signature Matrix
process_from_count      Count Matrix To Seurat Object
scMappR_and_pathway_analysis
                        Generate cellWeighted_Foldchanges, visualize,
                        and enrich.
scMappR_tissues         scMappR_tissues
seurat_to_generes       Identify all cell-type markers
single_gene_preferences
                        Single cell-type gene preferences
sm                      single_cell_process
tissue_by_celltype_enrichment
                        tissue_by_celltype_enrichment
tissue_scMappR_custom   Gene List Visualization and Enrichment with
                        Custom Signature Matrix
tissue_scMappR_internal
                        Gene List Visualization and Enrichment
                        (Internal)
toNum                   To Numeric.
tochr                   To Character.
topgenes_extract        Extract Top Markers
two_method_pathway_enrichment
                        two_method_pathway_enrichment
