# Generated by roxygen2: do not edit by hand

export(DeconRNAseq_CRAN)
export(cellmarker_enrich)
export(coEnrich)
export(compare_deconvolution_methods)
export(cwFoldChange_evaluate)
export(deconvolute_and_contextualize)
export(extract_genes_cell)
export(gProfiler_cellWeighted_Foldchange)
export(generes_to_heatmap)
export(get_gene_symbol)
export(get_signature_matrices)
export(gsva_cellIdentify)
export(heatmap_generation)
export(human_mouse_ct_marker_enrich)
export(make_TF_barplot)
export(pathway_enrich_internal)
export(plotBP)
export(process_dgTMatrix_lists)
export(process_from_count)
export(scMappR_and_pathway_analysis)
export(seurat_to_generes)
export(single_gene_preferences)
export(tissue_by_celltype_enrichment)
export(tissue_scMappR_custom)
export(tissue_scMappR_internal)
export(toNum)
export(tochr)
export(topgenes_extract)
export(two_method_pathway_enrichment)
importFrom(ADAPTS,estCellPercent)
importFrom(GSVA,gsva)
importFrom(Seurat,AverageExpression)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindIntegrationAnchors)
importFrom(Seurat,FindMarkers)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,IntegrateData)
importFrom(Seurat,PercentageFeatureSet)
importFrom(Seurat,PrepSCTIntegration)
importFrom(Seurat,RunPCA)
importFrom(Seurat,RunUMAP)
importFrom(Seurat,SCTransform)
importFrom(Seurat,ScaleData)
importFrom(Seurat,SelectIntegrationFeatures)
importFrom(downloader,download)
importFrom(gProfileR,gprofiler)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(gprofiler2,gost)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,barplot)
importFrom(graphics,plot)
importFrom(limSolve,lsei)
importFrom(pbapply,pblapply)
importFrom(pcaMethods,R2cum)
importFrom(pcaMethods,pca)
importFrom(pcaMethods,prep)
importFrom(pheatmap,pheatmap)
importFrom(reshape,melt)
importFrom(stats,complete.cases)
importFrom(stats,dist)
importFrom(stats,fisher.test)
importFrom(stats,ks.test)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,reorder)
importFrom(stats,sd)
importFrom(stats,shapiro.test)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)
