BuildNetwork            Display cell-type to cell-type interactive
                        networks
BuildShiny              A shiny app to display scDiffCom results
EraseRawCCI             Create a copy of a scDiffCom object without
                        'cci_table_raw'
FilterCCI               Filter a scDiffCom object with new filtering
                        parameters
GetDistributions        Return the slot 'distributions' from a
                        scDiffCom object
GetParameters           Return the slot 'parameters' from a scDiffCom
                        object
GetTableCCI             Return (a subset) of the slot 'cci_table_raw'
                        or 'cci_table_detected' from a scDiffCom object
GetTableORA             Return some or all ORA tables from the slot
                        'ora_table' from a scDiffCom object
LRI_human               A collection of human ligand-receptor
                        interactions.
LRI_mouse               A collection of mouse ligand-receptor
                        interactions.
LRI_rat                 A collection of rat ligand-receptor
                        interactions.
PlotORA                 Display top over-represented keywords from a
                        category of interest
ReduceGO                Reduce scDiffCom GO Terms
RunORA                  Run over-representation analysis
gene_ontology_level     All gene ontology terms annotated with their
                        levels
run_interaction_analysis
                        Run (differential) intercellular communication
                        analysis
scDiffCom-class         The scDiffCom Class
seurat_sample_tms_liver
                        A down-sampled Seurat object to use for testing
                        and benchmarking
show,scDiffCom-method   Display a scDiffCom object
