.First.lib	saemix.internal
advanced.gof	default.saemix.plots
AIC.SaemixObject	logLik
backward.procedure	backward.procedure
basic.gof	default.saemix.plots
BIC.covariate	logLik
BIC.SaemixObject	logLik
center.eps	saemix.internal
center.eta	saemix.internal
centerDist.NPcond	saemix.internal
checkInitialFixedEffects	checkInitialFixedEffects
coef	coef.saemix
coef,SaemixObject	coef.saemix
coef,SaemixObject-method	coef.saemix
coef.saemix	coef.saemix
coef.SaemixObject	coef.saemix
compare.saemix	compare.saemix
compute.eta.map	saemix.plot.data
compute.LLy	saemix.internal
compute.sres	saemix.plot.data
compute.Uy	saemix.internal
conddist.saemix	conddist.saemix
conditional.distribution	saemix.internal
conditional.distribution_c	saemix.internal
conditional.distribution_d	saemix.internal
covariate.fits	default.saemix.plots
cow.saemix	cow.saemix
createSaemixObject	createSaemixObject
createSaemixObject.empty	createSaemixObject
createSaemixObject.initial	createSaemixObject
cutoff	saemix.internal
cutoff.eps	saemix.internal
cutoff.max	saemix.internal
cutoff.res	saemix.internal
dataGen.case	boostrap.data
dataGen.NP	boostrap.data
dataGen.Par	boostrap.data
default.saemix.plots	default.saemix.plots
derivphi	saemix.internal
discreteVPC	discreteVPC
discreteVPC.aux	discreteVPC
discreteVPCcat	discreteVPC
discreteVPCcount	discreteVPC
discreteVPCTTE	discreteVPCTTE
dtransphi	saemix.internal
epilepsy.saemix	epilepsy.saemix
error	saemix.internal
error.typ	saemix.internal
estep	saemix
estimateIndividualParametersNewdata	saemixPredictNewdata
estimateMeanParametersNewdata	saemixPredictNewdata
eta	psi-methods
eta,SaemixObject-method	psi-methods
eta-methods	psi-methods
eta.saemix	psi-methods
eta.SaemixObject	psi-methods
exploreDataCat	plotDiscreteData
exploreDataCountHist	plotDiscreteData
exploreDataTTE	plotDiscreteData
fim.saemix	fim.saemix
fitted	fitted.saemix
fitted.saemix	fitted.saemix
fitted.SaemixObject	fitted.saemix
fitted.SaemixRes	fitted.saemix
forward.procedure	forward.procedure
gammarnd.mlx	saemix.internal
gqg.mlx	llgq.saemix
individual.fits	default.saemix.plots
initialiseMainAlgo	saemix
initialize,SaemixData-method	initialize-methods
initialize,SaemixModel-method	initialize-methods
initialize,SaemixObject-method	initialize-methods
initialize,SaemixRepData-method	initialize-methods
initialize,SaemixRes-method	initialize-methods
initialize,SaemixSimData-method	initialize-methods
initialize-methods	initialize-methods
interpol.lin	discreteVPCTTE
interpol.locf	discreteVPCTTE
knee.saemix	knee.saemix
kurtosis	testnpde
llgq.saemix	llgq.saemix
llis.saemix	llis.saemix
llqg.saemix	llgq.saemix
logLik	logLik
logLik.SaemixObject	logLik
lung.saemix	lung.saemix
map.saemix	map.saemix
mstep	saemix
mydiag	mydiag
normalise.eta	saemix.internal
normalise.eta.svd	saemix.internal
normcdf	saemix.internal
norminv	saemix.internal
npdeSaemix	npdeSaemix
oxboys.saemix	oxboys.saemix
PD1.saemix	PD1.saemix
PD2.saemix	PD1.saemix
phi	psi-methods
phi,SaemixObject-method	psi-methods
phi-methods	psi-methods
phi.saemix	psi-methods
phi.SaemixObject	psi-methods
plot	plot-SaemixObject-ANY-method
plot,ANY-method	plot-methods
plot,SaemixData	plot-SaemixData
plot,SaemixData,ANY-method	plot-SaemixData
plot,SaemixData-methods	plot-SaemixData
plot,SaemixModel	plot-SaemixModel
plot,SaemixModel,ANY-method	plot-SaemixModel
plot,SaemixModel,SaemixData-method	plot-SaemixModel-SaemixData-method
plot,SaemixModel-methods	plot-SaemixModel
plot,SaemixObject	plot-SaemixObject-ANY-method
plot,SaemixObject,ANY-method	plot-SaemixObject-ANY-method
plot,SaemixRes	SaemixRes-class
plot,SaemixSimData	plot-SaemixData
plot,SaemixSimData,ANY-method	plot-SaemixData
plot,SaemixSimData-method	plot-SaemixData
plot-methods	plot-methods
plot-SaemixData	plot-SaemixData
plot-SaemixModel	plot-SaemixModel
plot.saemix	plot-SaemixObject-ANY-method
plot.SaemixData	plot-SaemixData
plot.SaemixModel	plot-SaemixModel-SaemixData-method
plot.SaemixSimData	plot-SaemixData
plotDiscreteData	plotDiscreteData
plotDiscreteData.aux	plotDiscreteData
plotDiscreteDataElement	plotDiscreteData
plotnpde	plot-SaemixObject-ANY-method
predict,ANY-method	predict-methods
predict,SaemixObject	SaemixObject-class
predict,SaemixObject-method	predict-methods
predict-methods	predict-methods
predict.SaemixModel	predict.SaemixModel
print,ANY-method	print-methods
print,SaemixData	SaemixData-class
print,SaemixData-method	print-methods
print,SaemixModel	SaemixModel-class
print,SaemixModel-method	print-methods
print,SaemixObject	SaemixObject-class
print,SaemixObject-method	print-methods
print,SaemixRes	SaemixRes-class
print,SaemixRes-method	print-methods
print-methods	print-methods
print.saemix	print-methods
psi	psi-methods
psi,SaemixObject-method	psi-methods
psi-methods	psi-methods
psi.saemix	psi-methods
psi.SaemixObject	psi-methods
rapi.saemix	rapi.saemix
readSaemix	readSaemix-methods
readSaemix,SaemixData	read-methods
readSaemix,SaemixData-method	read-methods
readSaemix-methods	readSaemix-methods
replace.data.options	saemix.plot.setoptions
replace.plot.options	saemix.plot.setoptions
replaceData	replaceData
replaceData-methods	replaceData
replaceData.saemixObject	replaceData
resid	resid.saemix
resid.saemix	resid.saemix
resid.SaemixObject	resid.saemix
resid.SaemixRes	resid.saemix
residuals	resid.saemix
residuals.saemix	resid.saemix
residuals.SaemixObject	resid.saemix
residuals.SaemixRes	resid.saemix
saemix	saemix
saemix.bootstrap	saemix.bootstrap
saemix.data.setoptions	saemix.plot.setoptions
saemix.internal	saemix.internal
saemix.plot.convergence	saemix.plot.data
saemix.plot.correlations	saemix.plot.data
saemix.plot.data	saemix.plot.data
saemix.plot.distpsi	saemix.plot.data
saemix.plot.distribresiduals	saemix.plot.data
saemix.plot.fits	saemix.plot.data
saemix.plot.llis	saemix.plot.data
saemix.plot.mirror	saemix.plot.data
saemix.plot.npde	saemix.plot.data
saemix.plot.obsvspred	saemix.plot.data
saemix.plot.parcov	saemix.plot.data
saemix.plot.parcov.aux	saemix.plot.data
saemix.plot.randeff	saemix.plot.data
saemix.plot.randeffcov	saemix.plot.data
saemix.plot.scatterresiduals	saemix.plot.data
saemix.plot.select	saemix.plot.select
saemix.plot.setoptions	saemix.plot.setoptions
saemix.plot.vpc	saemix.plot.data
saemix.predict	saemix.predict
saemixControl	saemixControl
SaemixData	SaemixData-class
saemixData	saemixData
SaemixData-class	SaemixData-class
SaemixModel	SaemixModel-class
saemixModel	saemixModel
SaemixModel-class	SaemixModel-class
SaemixObject	SaemixObject-class
SaemixObject-class	SaemixObject-class
saemixPredictNewdata	saemixPredictNewdata
SaemixRepData	SaemixData-class
SaemixRepData-class	SaemixData-class
SaemixRes	SaemixRes-class
SaemixRes-class	SaemixRes-class
SaemixSimData	SaemixData-class
SaemixSimData-class	SaemixData-class
sampDist.NP	boostrap.data
sampDist.NPcond	boostrap.data
sampDist.Par	boostrap.data
show,SaemixData	SaemixData-class
show,SaemixData-method	show-methods
show,SaemixModel	SaemixModel-class
show,SaemixModel-method	show-methods
show,SaemixObject	SaemixObject-class
show,SaemixObject-method	show-methods
show,SaemixRepData-method	show-methods
show,SaemixRes	SaemixRes-class
show,SaemixRes-method	show-methods
show,SaemixSimData-method	show-methods
show-methods	show-methods
showall	showall-methods
showall,SaemixData	SaemixData-class
showall,SaemixData-method	showall-methods
showall,SaemixModel	SaemixModel-class
showall,SaemixModel-method	showall-methods
showall,SaemixObject	SaemixObject-class
showall,SaemixObject-method	showall-methods
showall,SaemixRes	SaemixRes-class
showall,SaemixRes-method	showall-methods
showall-methods	showall-methods
simul.saemix	simulate.SaemixObject
simulate.SaemixObject	simulate.SaemixObject
simulateContinuousSaemix	simulate.SaemixObject
simulateDiscreteSaemix	simulateDiscreteSaemix
simulateIndividualParameters	simulate.SaemixObject
simulateTTESaemix	simulateDiscreteSaemix
skewness	testnpde
ssq	saemix.internal
step.saemix	step.saemix
stepwise.procedure	stepwise.procedure
subset	subset
subset-methods	subset
subset.SaemixData	subset
summary	summary-methods
summary,ANY-method	summary-methods
summary,SaemixData	summary-methods
summary,SaemixData-method	summary-methods
summary,SaemixModel	SaemixModel-class
summary,SaemixModel-method	summary-methods
summary,SaemixObject	SaemixObject-class
summary,SaemixObject-method	summary-methods
summary,SaemixRes-method	summary-methods
summary-methods	summary-methods
testnpde	testnpde
theo.saemix	theo.saemix
toenail.saemix	toenail.saemix
tpdf.mlx	saemix.internal
transform	transform
transform.numeric	transform
transform.SaemixData	transformContCov
transformCatCov	transformCatCov
transformContCov	transformContCov
transphi	saemix.internal
transpsi	saemix.internal
trnd.mlx	saemix.internal
validate.covariance.model	validate.covariance.model
validate.names	validate.names
vcov	vcov
vcov.SaemixObject	vcov
vcov.SaemixRes	vcov
xbinning	xbinning
yield.saemix	yield.saemix
[	extract-methods
[,SaemixData-method	extract-methods
[,SaemixModel-method	sub-SaemixModel-method
[,SaemixObject-method	sub-SaemixObject-method
[,SaemixRepData-method	extract-methods
[,SaemixRes-method	sub-SaemixRes-method
[,SaemixSimData-method	extract-methods
[<-,SaemixData-method	extract-methods
[<-,SaemixModel-method	SaemixModel-class
[<-,SaemixObject-method	SaemixObject-class
[<-,SaemixRepData-method	extract-methods
[<-,SaemixRes-method	extract-methods
[<-,SaemixSimData-method	extract-methods
