R: Analysis of Small RNA Expression Changes in Hybrid Plants

# Analysis of Small RNA Expression Changes in Hybrid Plants

## Documentation for package ‘sRNAGenetic’ version 0.1.0

- DESCRIPTION file
- Package README

## Help Pages

basepreplot | Generate the base frequency plot of miRNA
Countfiliter | Filitering low expressed miRNAs based on count: Countfiliter
F1_miRNA_count | Sequences of miRNAs from one species
F1_miRNA_rpm | Sequences of miRNAs from one species
F1_sRNA_seq | Sequences of sRNAs from one species
genetic | Classification for 12 expression patterns
Get12Bins | Genetic effects analysis: Twelve bins of expression analysis (method2)
GetDAtable | Genetic effects analysis of miRNA: |d/a| (method 1)
lenplot | Generate the sRNA length distribution plot
mirnapredata | Generate the data of miRNA base frequence in each position
miVennData | Species specific expression analysis: miVennData
miVennPlot | Species specific expression analysis: miVennPlot
P1_miRNA_count | Sequences of miRNAs from one species
P1_miRNA_rpm | Sequences of miRNAs from one species
P1_sRNA_seq | Sequences of sRNAs from one species
P2_miRNA_count | Sequences of miRNAs from one species
P2_miRNA_rpm | Sequences of miRNAs from one species
P2_sRNA_seq | Sequences of sRNAs from one species
polyDESeq | Differential expression analysis
Rpmfiliter | Filitering low expressed miRNAs based on RPM: Rpmfiliter
srnapredata | Generate the data of sRNA length distribution