# Generated by roxygen2: do not edit by hand

S3method(print,rwty.chain)
export(analyze.rwty)
export(check.chains)
export(clade.freq)
export(combine.ptables)
export(cumulative.freq)
export(estimate.autocorr.m)
export(load.multi)
export(load.trees)
export(makeplot.acsf.cumulative)
export(makeplot.acsf.sliding)
export(makeplot.all.params)
export(makeplot.asdsf)
export(makeplot.autocorr)
export(makeplot.pairs)
export(makeplot.param)
export(makeplot.pseudo.ess)
export(makeplot.splitfreq.matrix)
export(makeplot.splitfreqs.cumulative)
export(makeplot.splitfreqs.sliding)
export(makeplot.topology)
export(makeplot.treespace)
export(slide.freq)
export(topological.approx.ess)
export(topological.autocorr)
export(topological.pseudo.ess)
export(tree.dist.matrix)
export(treespace)
import(ape)
import(ggplot2)
importFrom(GGally,ggpairs)
importFrom(TreeDist,ClusteringInfoDistance)
importFrom(TreeDist,InfoRobinsonFoulds)
importFrom(TreeDist,JaccardRobinsonFoulds)
importFrom(TreeDist,MASTInfo)
importFrom(TreeDist,MASTSize)
importFrom(TreeDist,MatchingSplitDistance)
importFrom(TreeDist,MatchingSplitInfoDistance)
importFrom(TreeDist,NNIDist)
importFrom(TreeDist,NyeSimilarity)
importFrom(TreeDist,PathDist)
importFrom(TreeDist,PhylogeneticInfoDistance)
importFrom(TreeDist,SPRDist)
importFrom(coda,effectiveSize)
importFrom(coda,mcmc)
importFrom(ggdendro,ggdendrogram)
importFrom(grid,unit)
importFrom(parallel,detectCores)
importFrom(parallel,mclapply)
importFrom(phangorn,RF.dist)
importFrom(plyr,.)
importFrom(plyr,ddply)
importFrom(plyr,summarize)
importFrom(reshape2,melt)
importFrom(utils,citation)
importFrom(viridis,plasma)
importFrom(viridis,scale_color_viridis)
importFrom(viridis,scale_fill_viridis)
importFrom(viridis,viridis)
