R: Extract and Analyze EchoMS Data from Sciex Wiff Files

# Extract and Analyze EchoMS Data from Sciex Wiff Files

## Documentation for package ‘rtmsEcho’ version 0.2.4

- DESCRIPTION file

## Help Pages

exampleWiff | Example wiff reader object
getAllFullScanAreas | Get the total area for given masses for all wells
getAllFullScanSpectra | Extract mass spectra for all wells
getAllMRMAreas | Extract the peak areas for MRM mass transitions for all wells
getAllTIC | Extract all total ion chromatograms from a Wiff file
getFullScanAreas | Get the total area for given masses for a particular well
getFullScanData | Extract raw Wiff full scan data
getFullScanSpectrum | Extract a full mass spectrum for a given well
getMRMAreas | Extract the peak areas for MRM mass transitions for a given well
getMRMChromatograms | Extract full chromatograms for each mass transition
getTIC | Extract a total ion chromatogram (TIC) from a Wiff file
getWiffShots | List of Shot Names in a given Wiff File
measureEjections | Measure total ion chromatogram peaks to estimate ejection time
measureEjections.default | Measure total ion chromatogram peaks to estimate ejection time
measureEjections.rtmsWiffReader | Measure total ion chromatogram peaks to estimate ejection time
newWiffReader | Open a Sciex EchoMS wiff File for Reading
processAllFullScanAreas | Fully process a Full Scan Wiff and scan File
processAllMRMAreas | Process an MRM file in total