R: Invoke 'Repast Simphony' Simulation Models

# Invoke 'Repast Simphony' Simulation Models

## Documentation for package ‘rrepast’ version 0.8.0

- DESCRIPTION file
- Package NEWS

## Help Pages

A B C D E G H J L M P R S U W

## -- A --

AddFactor | Adds a paramter to factor collection
AddFactor0 | AddFactor0
AddResults | Concatenate results of multiple runs
AoE.Base | AoE.Base
AoE.ColumnCoV | AoE.ColumnCoV
AoE.CoV | AoE.CoV
AoE.FullFactorial | AoE.FullFactorial design generator
AoE.GetMorrisOutput | AoE.GetMorrisOutput
AoE.LatinHypercube | AoE.LatinHypercube
AoE.MAE | AoE.MAE
AoE.Morris | AoE.Morris
AoE.NRMSD | AoE.NRMSD
AoE.RandomSampling | AoE.RandomSampling experiment desing generator
AoE.RMSD | AoE.RMSD
AoE.Sobol | AoE.Sobol
AoE.Stability | AoE.Stability
ApplyFactorRange | Corrects the LHS design matrix

## -- B --

BuildParameterSet | Builds the simulation parameter set

## -- C --

Calibration.GetMemberKeys | Calibration.GetMemberKeys
Calibration.GetMemberList | Calibration.GetMemberList
check.integration | check.integration
check.scenario | check.scenario
ClearResults | Clear the results data.frame
col.sum | col.sum
config.check | config.check
config.copylib | config.copylib
config.scenario | config.scenario
createOutputDir | Create output directory

## -- D --

df2matrix | df2matrix
dffilterby | dffilterby
dfround | dfround
dfsumcol | dfsumcol

## -- E --

Easy.Calibration | Easy.Calibration
Easy.getChart | Easy.getChart
Easy.getPlot | Easy.getPlot
Easy.Morris | Easy API for Morris's screening method
Easy.Run | Easy API for running a model
Easy.RunExperiment | Easy API for Runnning Experiments
Easy.Setup | Easy.Setup
Easy.ShowModelParameters | Easy.ShowModelParameters
Easy.Sobol | Easy API for Sobol's SA method
Easy.Stability | Easy API for output stability
Engine | Engine
Engine.endAt | Engine.endAt
Engine.Finish | Engine.Finish
Engine.getId | Returns the model id
Engine.GetModelOutput | Engine.GetModelOutput
Engine.getParameter | Engine.getParameter
Engine.getParameterAsDouble | Engine.getParameterAsDouble
Engine.getParameterAsNumber | Engine.getParameterAsNumber
Engine.getParameterAsString | Engine.getParameterAsString
Engine.getParameterNames | Engine.getParameterNames
Engine.getParameterType | Engine.getParameterType
Engine.LoadModel | Engine.LoadModel
Engine.resetModelOutput | Engine.resetModelOutput
Engine.RunModel | Engine.RunModel
Engine.SetAggregateDataSet | Engine.SetAggregateDataSet
Engine.setParameter | Engine.setParameter
enginestats.calls | enginestats.calls
enginestats.reset | enginestats.reset

## -- G --

getExperimentDataset | Helper function to get experiment 'dataset'
getExperimentOutput | Helper function to get experiment 'output'
getExperimentParamSet | Helper function to get experiment 'paramset'
GetFactorLevels | GetFactorLevels
GetFactorsSize | Get the number of factors
getId | Gets the model name
getKeyRandom | Gets Repast randomSeed name
getLogDir | getLogDir()
GetOutput | Gets the output
getOutputDir | Gets output directory
getpkgcores | getpkgcores
getpkgdefaultcores | getpkgdefaultcores
GetResults | Returns the model results
GetResultsParameters | Gets the parameters
GetSimulationParameters | Gets the simulation parameters
GetSimulationParameterType | GetSimulationParameterType
GoToPreviousDir | GoToPreviousDir
GoToWorkDir | GoToWorkDir

## -- H --

hybrid.distance | hybrid.distance
hybrid.value | hybrid.value

## -- J --

jarfile | jarfile
jvm.enablejmx | jvm.enablejmx
jvm.getruntime | jvm.getruntime
jvm.get_parameters | jvm.get_parameters
jvm.init | Init R/JVM environment
jvm.memory | jvm.memory
jvm.resetOut | jvm.resetOut
jvm.runtimegc | jvm.runtimegc
jvm.setOut | jvm.setOut
jvm.set_parameters | jvm.set_parameters

## -- L --

lcontains | lcontains
lget | get
Load | The Scenario loader
Logger.setLevelInfo | Set the log level to INFO
Logger.setLevelWarning | Set the log level to WARNING

## -- M --

Model | The easy API for model initilization

## -- P --

ParallelClose | ParallelClose
ParallelInit | ParallelInit
parallelize | parallelize
ParallellRunExperiment | ParallellRunExperiment
ParallelRun | ParallelRun
PB.close | PB.close
PB.disable | PB.disable
PB.enable | PB.enable
PB.get | PB.get
PB.init | PB.init
PB.isEnabled | PB.isEnabled
PB.pset | PB.pset
PB.rnum | PB.rnum
PB.set | PB.set
PB.update | PB.update
pick.fittest | pick.fittest
Plot.Calibration | Plot of calibration
Plot.Morris | Plot of Morris output
Plot.Sobol | Plot of Sobol output
Plot.Stability | Plot stability of output

## -- R --

Results.GetCharts | Results.GetCharts
Results.GetExperiment | Results.GetExperiment
Results.GetObject | Results.GetObject
Run | Run simulations
RunExperiment | Run an experimental setup

## -- S --

SaveSimulationData | Saving simulation output
SequenceItem | SequenceItem
setId | Sets the model name
setKeyRandom | Sets Repast randomSeed name
setOutputDir | Sets output directory
setpkgcores | setpkgcores
SetResults | Stores a data.frame
SetResultsParameters | Sets the parameters
SetSimulationParameter | SetSimulationParameter
SetSimulationParameters | Set parameters for running model
ShowClassPath | ShowClassPath
ShowCores | ShowUsedCores
ShowModelPaths | ShowModelPaths

## -- U --

UpdateDefaultParameters | UpdateDefaultParameters

## -- W --

WrapperRun | WrapperRun
WrapperRunExperiment | WrapperRunExperiment