# Generated by roxygen2: do not edit by hand

export(getReversions)
importFrom(BSgenome,getBSgenome)
importFrom(BSgenome,getSeq)
importFrom(BiocGenerics,do.call)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,strand)
importFrom(BiocGenerics,width)
importFrom(Biostrings,DNAString)
importFrom(Biostrings,matchPattern)
importFrom(Biostrings,readDNAStringSet)
importFrom(Biostrings,reverseComplement)
importFrom(Biostrings,subseq)
importFrom(Biostrings,translate)
importFrom(GenomeInfoDb,commonName)
importFrom(GenomeInfoDb,genome)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,gaps)
importFrom(GenomicRanges,promoters)
importFrom(IRanges,IRanges)
importFrom(IRanges,overlapsRanges)
importFrom(IRanges,ranges)
importFrom(IRanges,reverse)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,asBam)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(Rsamtools,scanBamHeader)
importFrom(Rsamtools,scanBamWhat)
importFrom(S4Vectors,subjectHits)
importFrom(ensembldb,cdsBy)
importFrom(ensembldb,cdsToTranscript)
importFrom(ensembldb,genes)
importFrom(ensembldb,genomeToTranscript)
importFrom(ensembldb,transcriptToCds)
importFrom(ensembldb,transcriptToGenome)
importFrom(ensembldb,transcripts)
importFrom(pwalign,alignedPattern)
importFrom(pwalign,alignedSubject)
importFrom(pwalign,nucleotideSubstitutionMatrix)
importFrom(pwalign,pairwiseAlignment)
importFrom(stats,quantile)
importFrom(utils,installed.packages)
importFrom(utils,write.table)
