RELEASE HISTORY OF THE "readMzXmlData" PACKAGE
==============================================

Version 2.8.4 [2025-10-17]:
- Fix CRAN NOTE about 
  'Lost braces in \itemize; \value handles \item{}{} directly' in man pages.

Version 2.8.3 [2023-08-19]:
- Remove package version from man page.
- Fix argument name in `?revfregexpr`.

Version 2.8.2 [2022-11-08]:
- Fix duplicated manual to avoid NOTE on CRAN.
- readMzXmlData now depends on R 4.2.0.
- Update URLs to https where possible.

Version 2.8.1 [2015-09-16]:
- Import utils::tail.

Version 2.8 [2014-09-27]:
- mqReadMzXml is removed. Use MALDIquantForeign::importMzXml instead.

Version 2.7 [2013-07-03]:
- Replace all paste(..., sep="") calls by paste0;
  now readMzXmlData depends on R >= 2.15.
- For empty scans mass and intensity are double() instead of list().

Version 2.6 [2013-04-03]:
- Remove LICENSE file.
- DESCRIPTION: move base64enc, digest and XML to "Imports".
- mqReadMzXml is marked as deprecated. Use MALDIquantForeign::importMzXml
  instead.

Version 2.5 [2012-12-09]:
- Replace .base64decode by base64enc::base64decode.
- Replace .fregexpr by .revfregexpr (start search for sha1 sum from the end of
  the file).

Version 2.4 [2012-09-12]:
- Fix error message if a required attribute is missing.
- Attribute "scanCount" is now optional (as intended in mzXML specification).
- Assume msLevel==1 if attribute "msLevel" is missing.
- Update DESCRIPTION file to use Authors@R and depends on R>=2.14 now.
- Roxygenize package.

Version 2.3 [2012-05-06]:
- mqReadMzXml always returns a list of MassSpectrum objects
  (for a single MassSpectrum object it returns a list, too).

Version 2.2.1 [2012-03-09]:
- Keep filename if removeMetaData==TRUE.
- Replace some warning()'s by stop()'s.

Version 2.2 [2012-01-30]:
- Add compression support (compressionType="zlib").

Version 2.1.1 [2012-01-28]:
- Remove import directives in NAMESPACE
  (Otherwise installation fails on R<2.14 because bitops has no NAMESPACE file.).

Version 2.1 [2012-01-25]:
- Change NAMESPACE file.
- Hide .base64decode by NAMESPACE.
- Add compressionType and compressedLen attributes
  (but don't handle them due lack of test files).

Version 2.0.1 [2012-01-11]:
- Fix dataProcessing parsing.

Version 2.0 [2011-10-04]:
- Complete rewrite of mzXML parser (using xmlEventParse; no wrapper of
  caMassClass' read.mzXML anymore).

Version 1.3.1 [2011-09-24]:
- Fix import of mzXML 3.x files.
  (attribute "pairOrder" (mzXML 2.2) is called "contentType" in 3.x).

Version 1.3 [2011-05-28]:
- Add mqReadMzXml.

Version 1.2 [2011-03-21]:
- Unhide .read.mzXML and .base64decode by NAMESPACE.
- Surround package names by double quotes.

Version 1.1 [2011-02-22]:
- Prepend dot to function names of read.mzXML and base64decode to avoid
  conflicts with caMassClass.
- Hide .read.mzXML and .base64decode by NAMESPACE.

Version 1.0 [2011-02-18]:
- First public release.
- Reads mass spectrometry data from mzXML files.

