R: Age-Depth Modelling using Bayesian Statistics

# Age-Depth Modelling using Bayesian Statistics

## Documentation for package ‘rbacon’ version 3.5.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

A.modelled | Calculate modelled 210Pb
accrate.age | Obtain estimated accumulation rates for any age of a core.
accrate.age.ghost | Plot a core's accumulation rates against calendar time.
accrate.age.summary | Provide a summary of the estimated accumulation rates for any age of a core.
accrate.depth | Obtain estimated accumulation rates as for any depth of a core.
accrate.depth.ghost | Plot modelled accumulation rates against the depths of a core.
accrate.depth.summary | Provide a summary of the estimated accumulation rates for any depth of a core.
accrates.core | Provide a summary of the estimated accumulation rates for a range of core depths
add.dates | Add dates to age-depth plots
agedepth | Plot an age-depth model
agemodel.it | Extract one age-model iteration
ageranges | save age ranges of depth(s)
AgesOfEvents | Event probabilities against calendar age
background | calculate probabilities that Pb-210 data have reached background levels
Bacon | Main age-depth modelling function
Bacon.Age.d | Output all ages for a single depth.
Bacon.cleanup | Remove files made to produce the current core's age-depth model.
Bacon.d.Age | Output all depths for a single age.
Bacon.hist | Calculate age distributions of depths.
bacon2clam | Translate Bacon .csv files to clam .csv files.
Baconvergence | Test to identify poorly mixed MCMC runs.
calib.plot | Plot the dates
clam2bacon | Translate clam .csv files to Bacon .csv files.
draw.pbmeasured | Plot the 210Pb data
draw.pbmodelled | Plot the 210Pb data
flux.age.ghost | Plot flux rates for proxies.
MCMC.diagnostics | Test mixing and stationarity of the MCMC run
proxy.ghost | Proxies analysed along the depths of a core can be plotted as 'proxy-ghost' graphs against calendar time while taking into account chronological uncertainties. Here darker grey indicates more likely calendar ages for specific proxy values.
scissors | Remove the first n iterations.
set.initvals | Set initial values for the Bacon MCMC run.
squeeze | Squeeze some depths of a core
stretch | Stretch some depths of a core
thinner | Thin iterations.
tofu | Bacon for vegans