# Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects

## Documentation for package ‘rNeighborQTL’ version 1.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

calc_neiprob | Calculating a set of neighbor QTL effects from conditional genotype probabilities
calc_pve | Calculating phenotypic variation explained by neighbor effects
decompose_genoprobs | Decomposition of conditional genotype probabilities
eff_neighbor | Estimation of self and neighbor QTL effects across a genome
genoprobs2selfprobs | Calculating a set of self QTL effects from conditional genotype probabilities
get_markers | Reshaping marker information
int_neighbor | Testing marker-by-marker epistasis in neighbor QTL effects
logLik_glm.fit | Calculating log-likelihood in generalized linear models
min_dist | Calculating the minimum distance
neiprob | Calculating neighbor QTL effects
perm_neighbor | Permutation tests for neighbor effects with a QTL model
plot_eff | Plot self and neighbor QTL effects across a genome
plot_nei | Plot LOD score for self or neighbor QTL effects
scan_neighbor | Genome scan for neighbor effects with a QTL model
selfprob | Calculating self QTL effects
sim_nei_qtl | Phenotype simulation for neighbor QTL effects