R: Evolutionary Diversity Metrics for Raster Data

# Evolutionary Diversity Metrics for Raster Data

## Documentation for package ‘phyloraster’ version 2.3.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

arg.check | Check for missing arguments in function call
canape.rast | Classify Phylogenetic Endemism using rasters
dataR | Presence-absence of 33 Australian tree frogs (Rosauer 2017)
delta.grid | Delta of Diversity Metrics
df2rast | Transform a data.frame to raster
geo.phylo | Calculate phylogenetic community metrics for raster data
geo.phylo.ses | Calculate phylogenetic community metrics and their standardized effect sizes for raster data
inv.range | Calculate the inverse of range size
load.data.rosauer | Load an example dataset with presence-absence data of 33 tree frogs and a phylogenetic tree for this species
phylo.pres | Prepare rasters and phylogenetic tree to run community metrics
range_size | Calculate range size for a set of species using a raster as input
rast.ed | Calculate Evolutionary distinctiveness for raster data
rast.ed.ses | Standardized effect size for Evolutionary distinctiveness
rast.pd | Calculate phylogenetic diversity for raster data
rast.pd.ses | Standardized effect size for Phylogenetic diversity
rast.pe | Calculate phylogenetic endemism for raster data
rast.pe.ses | Standardized effect size for Phylogenetic endemism
rast.sr | Calculate species richness for raster data
rast.we | Calculate weighted endemism for raster data
rast.we.ses | Calculate weighted endemism standardized for species richness
shp2rast | Rasterize shapefile
species.ed | Calculate Evolutionary distinctiveness for each species
species.tip.length | Compute species tip length
tip.root.path | Compute tree edge lengths and node paths from root to each tip