R: Calculating Topological Properties of Phylogenies

# Calculating Topological Properties of Phylogenies

## Documentation for package ‘phyloTop’ version 2.1.3

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

avgLadder | Average ladder size
cherries | Cherry number
colless.phylo | Colless number
configShow | Plot a tree highlighting configurations
getDepths | Find the depth of each node
getLabGenealogy | Create genealogy
ILnumber | IL number
ladderShow | Show ladders
ladderSizes | Ladder sizes
makeEpiRecord | Simulate epidemiological record
maxHeight | Maximum tree height
nConfig | Configuration sizes in a tree
nodeDepth | Node depth
nodeDepthFrac | Fraction of nodes beyond a given depth
nodeImb | Node imbalance
nodeImbFrac | Fraction of nodes with given imbalance
phyloTop | phyloTop: topological properties of phylogenies
pitchforks | Number of pitchforks
rtree4 | Random phylo4 tree
sackin.phylo | Sackin index
splitTop | Split topology
stairs | Stairs
subtreeShow | Highlight a subtree
treeImb | Tree imbalance
widths | Number of nodes at each depth