R: Parallelised Estimation of Prediction Error

# Parallelised Estimation of Prediction Error

## Documentation for package ‘peperr’ version 1.7

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

aggregation.brier | Determine the Brier score for a fitted model
aggregation.misclass | Determine the missclassification rate for a fitted model
aggregation.pmpec | Determine the prediction error curve for a fitted model
complexity.cv.glmnet | glmnet Cox backend
complexity.cv.grpsurv | grpreg grouped Cox backend
complexity.cv.ncvsurv | ncvreg survival backend
complexity.cv.penalized | Complexity selection helpers for penalized backends
complexity.cvrisk.mboost | mboost Cox backend
complexity.cvSGL.cox | Sparse-group-lasso Cox backend
complexity.fusedLASSO | Complexity selection helpers for penalized backends
complexity.ipec.CoxBoost | Interface function for CoxBoost complexity selection via integrated prediction error curves
complexity.LASSO | Complexity selection helpers for penalized backends
complexity.mincv.CoxBoost | Interface for CoxBoost selection of the optimal number of boosting steps via cross-validation
complexity.oob.rfsrc | randomForestSRC survival backend
complexity.ripec.CoxBoost | Interface function for CoxBoost complexity selection via integrated prediction error curves
extract.fun | Extract functions, libraries and global variables to be loaded onto a compute cluster
fit.CoxBoost | Interface function for fitting a CoxBoost model
fit.coxph | Interface function for fitting a Cox proportional hazards model
fit.fusedLASSO | Penalized backend fitting wrappers
fit.glmnet | glmnet Cox backend
fit.grpsurv | grpreg grouped Cox backend
fit.LASSO | Penalized backend fitting wrappers
fit.mboost.coxph | mboost Cox backend
fit.ncvsurv | ncvreg survival backend
fit.penalized | Penalized backend fitting wrappers
fit.rfsrc | randomForestSRC survival backend
fit.SGL.cox | Sparse-group-lasso Cox backend
ipec | Integrated prediction error curve
peperr | Parallelised Estimation of Prediction Error
perr | Prediction error estimates
PLL | Generic function for extracting the predictive partial log-likelihood
PLL.CoxBoost | Predictive partial log-likelihood for a CoxBoost model fit
PLL.coxnet | glmnet Cox backend
PLL.coxph | Predictive partial log-likelihood for Cox poportional hazards model
PLL.grpsurv | grpreg grouped Cox backend
PLL.mboost_coxph | mboost Cox backend
PLL.ncvsurv | ncvreg survival backend
PLL.penfit | Predictive partial log-likelihood for penalized Cox models
PLL.SGL_cox | Sparse-group-lasso Cox backend
plot.peperr | Plot method for peperr object
pmpec | Calculate prediction error curves
predictProb | Generic function for extracting predicted survival probabilities
predictProb.CoxBoost | Extract predicted survival probabilities from a CoxBoost fit
predictProb.coxnet | glmnet Cox backend
predictProb.coxph | Extract predicted survival probabilities from a coxph object
predictProb.grpsurv | grpreg grouped Cox backend
predictProb.mboost_coxph | mboost Cox backend
predictProb.ncvsurv | ncvreg survival backend
predictProb.penfit | Predicted survival probabilities for penalized Cox models
predictProb.rfsrc | randomForestSRC survival backend
predictProb.SGL_cox | Sparse-group-lasso Cox backend
predictProb.survfit | Extract predicted survival probabilities from a survfit object
resample.indices | Generation of indices for resampling Procedure