R: Versatile Functions for Working with Pedigrees

# Versatile Functions for Working with Pedigrees

## Documentation for package ‘pedigreeTools’ version 0.3

- DESCRIPTION file

## Help Pages

Dmat | Mendelian sampling variance
editPed | Edits a disordered or incomplete pedigree
getA | Additive relationship matrix
getAInv | Inverse of the additive relationship matrix
getASelfing | Extends the pedigree according to number of selfing cycles and also optionally computes the Additive Relationship Matrix for that pedigree.
getASubset | Subset of additive relationship matrix
getD | Mendelian sampling variance
getDInv | Mendelian sampling variance
getGenAncestors | Counts number of generations of ancestors for one subject. Use recursion.
getL | Relationship factor from a pedigree
getLInv | Inverse relationship factor from a pedigree
getT | Gene flow from a pedigree
getTInv | Inverse gene flow from a pedigree
inbreeding | Inbreeding coefficients from a pedigree
ped2DF | Convert a pedigree to a data frame
pedigree | Constructor for pedigree objects
pedigree-class | Pedigree class
pedinbred-class | Pedigree class
prunePed | Subsets a pedigree for a specified vector of individuals up to a specified number of previous generations using recursion.
relfactor | Relationship factor from a pedigree
relfactorInv | Inverse relationship factor from a pedigree