# Generated by roxygen2: do not edit by hand

S3method(a_diversity,data.frame)
S3method(a_diversity,numeric)
S3method(a_diversity,pc_otu)
S3method(aor,data.frame)
S3method(as.dist,b_dist)
S3method(b_analyse,data.frame)
S3method(plot,AOR)
S3method(plot,NTI_RC)
S3method(plot,a_res)
S3method(plot,b_dist)
S3method(plot,b_res)
S3method(plot,dist)
S3method(plot,g_test)
S3method(plot,ncm_res)
S3method(plot,pro_res)
S3method(plot,rare_res)
S3method(plot,time_cm)
S3method(plot,zeta_decay)
S3method(plot,zeta_res)
S3method(print,pc_otu)
S3method(print,virus_res)
S3method(summary,pc_otu)
export("%<>%")
export("%>%")
export(ALDEX)
export(RCbray1)
export(RDA_plot)
export(a_diversity)
export(add_strip)
export(add_tax)
export(ann_tree)
export(aor)
export(as.b_dist)
export(b_NTI1)
export(b_analyse)
export(b_res_3d)
export(batch_mediate)
export(bbtt)
export(before_tree)
export(check_taxonkit)
export(convert_taxon_name)
export(cor_net)
export(df2tree)
export(df2tree1)
export(diff_da)
export(download_taxonkit_dataset)
export(drop_tips_update)
export(easy_tree)
export(envfitt)
export(geo_sim)
export(get_diff_type)
export(gp_dis_density)
export(grap_p_test)
export(install_taxonkit)
export(kwtest)
export(load_N_data)
export(load_mpa_df)
export(mat_dist)
export(micro_sbatch)
export(multi_bar)
export(multi_conf)
export(myCAP)
export(myCCA)
export(myRDA)
export(name_or_id2df)
export(ncm)
export(nst)
export(nti_rc)
export(pc_otu)
export(pc_valid)
export(permanova)
export(plot_N_cycle)
export(plot_checkm2_res)
export(plot_contigs_quality)
export(plot_element_cycle)
export(plot_gtdb_tr)
export(plot_one_phage)
export(plot_two_tree)
export(pre_assembly_stats)
export(pre_fastp)
export(pre_format_report)
export(pre_genomad)
export(pre_gtdb_tk)
export(pre_tax_table)
export(procrustes_analyse)
export(rare_curve_sample)
export(rare_curve_species)
export(rarefaction)
export(stamp_plot)
export(suijisenlin)
export(tax_lca)
export(taxonkit_filter)
export(taxonkit_lca)
export(taxonkit_lineage)
export(taxonkit_list)
export(taxonkit_name2taxid)
export(taxonkit_reformat)
export(time_by_cm)
export(volcano_p)
export(z_diversity)
export(z_diversity_decay)
import(dplyr)
import(ggplot2)
import(scales)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,pull)
importFrom(ggplot2,geom_tile)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(pcutils,change_fac_lev)
importFrom(pcutils,dabiao)
importFrom(pcutils,generate_labels)
importFrom(pcutils,get_cols)
importFrom(pcutils,hebing)
importFrom(pcutils,lib_ps)
importFrom(pcutils,rm_low)
importFrom(pcutils,strsplit2)
importFrom(pcutils,t2)
importFrom(pcutils,trans)
importFrom(pcutils,update_param)
importFrom(readr,read_delim)
importFrom(readr,read_table)
importFrom(reshape2,melt)
importFrom(stats,aggregate)
importFrom(stats,anova)
importFrom(stats,as.dist)
importFrom(stats,kmeans)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,relevel)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,t.test)
importFrom(stats,time)
importFrom(stats,var)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,tail)
