Package: pcadapt
Type: Package
Title: Fast Principal Component Analysis for Outlier Detection
Version: 4.4.1
Date: 2025-07-25
Authors@R: c(
    person("Keurcien", "Luu", role = "aut"), 
    person("Michael", "Blum", role = "aut"),
    person("Florian", "Privé", role = c("aut", "cre"), 
           email = "florian.prive.21@gmail.com"),
    person("Eric", "Bazin", role = "ctb"),
    person("Nicolas", "Duforet-Frebourg", role = "ctb"))
Description: Methods to detect genetic markers involved in biological
    adaptation. 'pcadapt' provides statistical tools for outlier detection based on
    Principal Component Analysis. Implements the method described in (Luu, 2016)
    <DOI:10.1111/1755-0998.12592> and later revised in (Privé, 2020) 
    <DOI:10.1093/molbev/msaa053>.
License: GPL (>= 2)
Imports: bigutilsr (>= 0.3), data.table, ggplot2 (>= 3.4), magrittr,
        mmapcharr (>= 0.3), Rcpp (>= 0.12.8), RSpectra
LinkingTo: mmapcharr, Rcpp, rmio
Suggests: plotly, shiny, spelling, testthat, vcfR
RoxygenNote: 7.3.2
Encoding: UTF-8
Language: en-US
URL: https://github.com/bcm-uga/pcadapt
BugReports: https://github.com/bcm-uga/pcadapt/issues
NeedsCompilation: yes
Packaged: 2025-07-25 10:50:28 UTC; au639593
Author: Keurcien Luu [aut],
  Michael Blum [aut],
  Florian Privé [aut, cre],
  Eric Bazin [ctb],
  Nicolas Duforet-Frebourg [ctb]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Repository: CRAN
Date/Publication: 2025-07-25 18:50:09 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-28 08:09:12 UTC; unix
Archs: pcadapt.so.dSYM
