ESD                     Compute Expected Squared Divergence (ESD) for
                        Evolutionary Models
IC                      Compute Information Criteria
Kfiltertv               Time-varying Kalman filter calculations
LRI                     Log-rate, Log-interval (LRI) method of
                        Gingerich
akaike.wts              Compute Akaike weights from AIC scores
as.paleoTS              Make a Paleontological Time-series object
as.paleoTSfit           Create a 'paleoTSfit' object
bootSimpleComplex       Bootstrap test to see if a complex model is
                        significantly better than a simple model.
cantius_L               Time-series of the length of lower first molar
                        for the Cantius lineage
checkSSMresiduals       Compute and (optionally) plot residuals from
                        SSM model fit
compareModels           Compare model fits for a paleontological
                        time-series
dorsal.spines           Time-series of dorsal spine data from a fossil
                        stickleback lineage
fit.sgs                 Fit a model of trait evolution with a
                        protracted punctuation.
fit3models              Fit a set of standard evolutionary models
fit9models              Fit large set of models to a time-series
fitGpunc                Fit trait evolution model with punctuations
                        estimated from the data
fitModeShift            Fit model in which the mode of trait evolution
                        shifts once
fitMult                 Fit the same simple model across multiple
                        time-series
fitSimple               Fit simple models of trait evolution
ln.paleoTS              Approximate log-transformation of time-series
                        data
lynchD                  Compute Lynch's Delta rate metric
mle.GRW                 Analytical ML estimator for random walk and
                        stasis models
opt.GRW                 Fit evolutionary model using "AD"
                        parameterization
opt.GRW.shift           Fit random walk model with shift(s) in
                        generating parameters
opt.covTrack            Fit a model in which a trait tracks a covariate
opt.joint.GRW           Fit evolutionary models using the "Joint"
                        parameterization
opt.joint.OU            Fit Ornstein-Uhlenbeck model using the "Joint"
                        parameterization
opt.punc                Fit a model of trait evolution with specified
                        punctuation(s)
opt.ssm.GRW             Fit evolutionary models using state-space
                        models (SSM)
plot.paleoTS            Plot a paleoTS object
pool.var                Compute a pooled variance
print.paleoTSfit        Print a paleoTSfit object
read.paleoTS            Read a text-file with data from a
                        paleontological time-series
sim.GRW                 Simulate random walk or directional time-series
                        for trait evolution
sim.GRW.shift           Simulate (general) random walk with shift(s) in
                        generating parameters
sim.OU                  Simulate an Ornstein-Uhlenbeck time-series
sim.Stasis              Simulate Stasis time-series for trait evolution
sim.Stasis.RW           Simulate trait evolution with a mode shift
sim.covTrack            Simulate trait evolution that tracks a
                        covariate
sim.punc                Simulate a punctuated time-series
sim.sgs                 Simulate protracted punctuation
std.paleoTS             Convert time-series to standard deviation units
sub.paleoTS             Subsample a paleontological time-series
test.var.het            Test for heterogeneity of variances among
                        samples in a time-series
