R: Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory Network Inference

# Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory Network Inference

## Documentation for package ‘pGRN’ version 0.3.5

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

data_transform | Pseudotime based Expression Data Transformation
get_dtw_dist_bidirectional | Bidirectional DTW Distance
get_dtw_dist_mat | DTW distance matrix for all genes
get_networks | Get the list of sub-networks
matrix2adj | Convert distance matrix to adjacency dataframe
module_networks | Get module level networks
pGRN | pGRN: creates gene regulatory network based on single cell pseudotime information
pGRNDB | pGRN example data
plot_network | Plot stationary network
plot_network_i | Plot interactive network
run_dtw | Get network adjacency dataframe based on DTW method
run_granger_test | Use Granger-causality Test to get gene-gene regulatory relationship
slideWindows | Sliding Window Average