A_selected              Adjacency Matrix for Orthology Graph
AngGym                  Angiosperms Gymnosperms
agf                     Angiosperms Gymnosperms Ferns
coltips                 Colouring Tree Tips
gapless_msa             Remove Gaps in a MSA
getseqGS                Get the GS Sequence
madRoot                 Find The Root of a Phylogenetic Tree Using MAD
                        Method
mapTrees                Map Gene Tree into Species Tree
mltree                  Build Up a ML Tree
msa                     Multiple Sequence Alignment
orthG                   Infer GS OrthoGroups Within a Set of Species
orthP                   Search Orthologous of a Given Protein
orthology               Infer OrthoGroups Using Tree Reconciliation
sdf                     Seed Plants and Ferns GS
selected_tr             Ultrametric Rooted Seed Plants Tree
speciesGS               Map Species Names
subsetGS                GS Proteins Report
