R: Automated Method for Verbal Autopsy

# Automated Method for Verbal Autopsy

## Documentation for package ‘openVA’ version 1.2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

codeVA | Running automated method on VA data
ConvertData | Converting Input data with different coding scheme to standard format
ConvertData.phmrc | Convert standard PHMRC data into binary indicator format
csmf_eava | Calculate CSMF from EAVA::codEAVA output
DataEAVA | 1,736 records of Sample Input
getCCC | Calculate Overall chance-corrected concordance (CCC)
getCSMF | Obtain CSMF from fitted model
getCSMF_accuracy | Calculate CSMF accuracy
getIndivProb | Extract individual distribution of cause of death
getPHMRC_url | Get the URL to the PHMRC dataset
getTopCOD | Extract the most likely cause(s) of death
grouping_eava_child | Mapping for child causes of death to the list used by the EAVA algorithm.
grouping_eava_neonate | Mapping for neonate causes of death to the list used by the EAVA algorithm.
interVA_train | Extended InterVA method for non-standard input
NeonatesVA5 | 200 records of Sample Input
openVA_status | Check openVA packages status
openVA_update | Update openVA packages
plot.eava | Create CSMF plot for EAVA::codEAVA output
plot.vacalibration | Plot CSMF from a vacalibration object
plotVA | Plot top CSMF for a fitted model
prepCalibration | Convert the assigned causes to the format expected by vacalibration::vacalibration().
print.eava | Print method for "eava" class.
print.eava_summary | Print method for summarizing results from EAVA algorithm.
print.vacalibration | Print method for vacalibration model fits
print.vacalibration_summary | Print method for summarizing vacalibration results
RandomVA6 | 1,736 records of Sample Input
stackplotVA | plot grouped CSMF from a "insilico" object
summary.eava | Summary of results obtained by fitting the EAVA algorithm.
summary.vacalibration | Summary of results obtained by vacalibration