R: Interactive Annotation of Characters with Biological Ontologies

# Interactive Annotation of Characters with Biological Ontologies

## Documentation for package ‘ontoFAST’ version 1.0.0

- DESCRIPTION file

## Help Pages

annot_all_chars | Annotate all character statements with ontology terms
annot_char_grep | Annotate a character statement with ontology terms
chars_per_term | Get number of chracters per each ontology term
edges2list | Convert edge matrix to list
exclude_terms | Ontology terms to exclude for sunburst plot
export_annotations | Export annotation data
export_cytoscape | Export to Cytoscape format
get_ancestors_chars | Get ancestal ontology terms for a set of characters
get_descendants_chars | Get characters that descendants of selected ontology term
get_onto_id | Get IDs for ontology names
get_onto_name | Get names for ontology IDs
HAO | Hymenoptera Anatomy Ontology (HAO)
list2edges | Convert list to edge matrix
make_shiny_in | Make an ontology object for visualization
onto_process | Shortcut to process characters and ontology
paths_sunburst | Return ontology paths for characters
runOntoFast | Run ontoFAST interactively
Scarab | A modified Hymenoptera Anatomy Ontology (HAO) to accommodate anatomy of dung beetles
Sharkey_2011 | Hymenoptera character statements
Sharkey_2011_annot | Hymenoptera characters annotated with ontology terms
syn_extract | Link synonyms with ontology terms
table2list | Converts a table to list
Tarasov_2017_annot | Dung beetle characters annotated with ontology terms