Package: omicsTools
Title: Omics Data Process Toolbox
Version: 1.1.7
Date: 2025-12-16
Authors@R: c(
    person("Yaoxiang", "Li", , "liyaoxiang@outlook.com", role = c("cre", "aut"),
           comment = c(ORCID = "0000-0001-9200-1016"))
  )
Description: Processing and analyzing omics data from genomics, transcriptomics, proteomics, and metabolomics platforms. It provides functions for preprocessing, normalization, visualization, and statistical analysis, as well as machine learning algorithms for predictive modeling. 'omicsTools' is an essential tool for researchers working with high-throughput omics data in fields such as biology, bioinformatics, and medicine.The QC-RLSC (quality control–based robust LOESS signal correction) algorithm is used for normalization. Dunn et al. (2011) <doi:10.1038/nprot.2011.335>.
License: AGPL (>= 3)
Depends: R (>= 4.1.0)
Imports: bs4Dash, cli, config (>= 0.3.1), dbscan, dplyr, DT, forcats,
        ggplot2, ggpubr, ggrepel, ggsci, ggvenn, golem (>= 0.3.5),
        janitor, magrittr, matrixStats, grDevices, methods, moments,
        outliers, pheatmap, purrr, RColorBrewer, readxl, readr, rlang,
        stats, shiny (>= 1.7.2), shinycssloaders, shinyWidgets,
        stringr, tibble, tidyr, utils, viridis, tools
Encoding: UTF-8
RoxygenNote: 7.3.2
Suggests: Biobase, pvca, testthat (>= 3.0.0), knitr, rmarkdown, Boruta,
        randomForest, caret, recipes, parsnip, workflows, rsample,
        tune, dials, doParallel, vip, GOplot, openxlsx, UpSetR, zip
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-12-16 15:10:24 UTC; Bach
Author: Yaoxiang Li [cre, aut] (ORCID: <https://orcid.org/0000-0001-9200-1016>)
Maintainer: Yaoxiang Li <liyaoxiang@outlook.com>
Repository: CRAN
Date/Publication: 2025-12-16 15:40:02 UTC
Built: R 4.6.0; ; 2026-05-01 04:33:17 UTC; unix
