R: Analysis of Oceanographic Data

# Analysis of Oceanographic Data

## Documentation for package ‘oce’ version 1.8-3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Code demos. Use demo() to run them.
- Package NEWS

## Help Pages

A B C D E F G H I J L M N O P R S T U V W X misc

## -- A --

abbreviateTimeLabels | Abbreviate a Vector of Times by Removing Commonalities
ad2cpCodeToName | Map AD2CP ID Code to oce Name
ad2cpHeaderValue | Infer an Item From a Nortek AD2CP File Header
addSpine | Add a Spine to a section Object
adp | Sample adp Data
adp-class | Class to Store Acoustic-Doppler Profiler Data
adpAd2cpFileTrim | Trim an AD2CP File
adpConvertRawToNumeric | Convert Raw to Numeric Values in an adp Object
adpEnsembleAverage | Ensemble Average an adp Object in Time
adpFlagPastBoundary | Flag adp Data Past Water Column Boundary
adpRdiFileTrim | Trim an RDI adp File
adp_rdi.000 | Sample adp File in RDI Format
adv | Sample adv Data
adv-class | Class to Store Acoustic-Doppler Velocimeter Data
advSontekAdrFileTrim | Trim a Sontek ADR adv File
airRho | Air Density
amsr | Sample amsr Data (Near Nova Scotia)
amsr-class | Class to Store AMSR-2 Satellite Data
angle2hms | Convert Astronomical Angle in Degrees to Hours, Minutes and Seconds
angleRemap | Convert Angle From 0:360 to -180:180 Convention
applyMagneticDeclination | Alter an Object to Account for Magnetic Declination (Generic)
applyMagneticDeclination-method | Alter an adp Object to Account for Magnetic Declination
applyMagneticDeclination-method | Alter an adv Object to Account for Magnetic Declination
applyMagneticDeclination-method | Alter a cm Object to Account for Magnetic Declination
applyMagneticDeclination-method | Alter an Object to Account for Magnetic Declination
approx3d | Trilinear Interpolation in a 3D Array
argo | Sample argo Data
argo-class | Class to Store Argo Profiler Data
argoGrid | Grid Argo Float Data
argoJuldToTime | Convert Argo Julian Day to R Time
argoNames2oceNames | Convert Argo Data Name to Oce Name
argShow | Show a Function Argument
as.adp | Create an adp Object
as.argo | Coerce Data Into an argo Object
as.cm | Coerce Data Into a cm Object
as.coastline | Coerce Data Into a coastline Object
as.ctd | Coerce Data Into a ctd Object
as.echosounder | Coerce Data Into an echosounder Object
as.gps | Coerce Data Into a gps Object
as.ladp | Coerce Data Into an ladp object
as.lisst | Coerce Data Into a lisst Object
as.lobo | Coerce Data Into a lobo Object
as.met | Coerce Data Into a met Object
as.oce | Coerce Something Into an oce Object
as.rsk | Coerce Data Into a rsk Object
as.sealevel | Coerce Data Into a sealevel Object
as.section | Create a Section
as.tidem | Create tidem Object From Fitted Harmonic Data
as.topo | Coerce Data Into a topo Object
as.unit | Convert a String to a Unit
as.windrose | Create a windrose Object
as.xbt | Create an xbt Object

## -- B --

bcdToInteger | Convert a BCD Value to an Integer Value
beamName | Get Names of Acoustic-Doppler Beams
beamToXyz | Change the Coordinate System in an adv or adp Object
beamToXyzAdp | Convert adp Object From Beam to XYZ Coordinates
beamToXyzAdpAD2CP | Convert From Beam to XYZ Coordinates (AD2CP adp Data)
beamToXyzAdv | Convert adv Object from Beam Coordinates to XYZ Coordinates
beamUnspreadAdp | Adjust adp Object to Account for Spherical Spreading
bilinearInterp | Bilinear Interpolation Within a Grid
binApply1D | Apply a Function to Vector Data
binApply2D | Apply a Function to Matrix Data
binAverage | Bin-average a Vector y, Based on x Values
binCount1D | Bin-count Vector Data
binCount2D | Bin-count Matrix Data
binmapAdp | Bin-map an adp Object
binMean1D | Bin-average f=f(x)
binMean2D | Bin-average f=f(x,y)
bound125 | Calculate a Bound, Rounded up to Mantissa 1, 2, or 5
bremen-class | Class to Store Bremen-formatted Data
byteToBinary | Format Bytes as Binary (Defunct)

## -- C --

cm | Sample cm Data
cm-class | Class to Store Current Meter Data
cnvName2oceName | Infer Variable Name, Units and Scale From a Seabird Header
coastline-class | Class to Store Coastline Data
coastlineBest | Find the Name of the Best Coastline Object
coastlineCut | Cut a Coastline Object at Specified Longitude
coastlineWorld | Sample coastline Data (Global, at 1:110M scale)
colormap | Calculate a Color Map
colormapGMT | Create a GMT-type (CPT) Colormap
composite | Create a Composite Object by Averaging Across Good Data
composite-method | Create a Composite of amsr Satellite Data
composite-method | Composite by Averaging Across Data
computableWaterProperties | Determine Available Derived Water Properties
concatenate | Concatenate oce Objects (Generic)
concatenate-method | Concatenate adp Objects
concatenate-method | Concatenate a List of oce Objects
concatenate-method | Concatenate oce Objects (oce-Specific)
coriolis | Coriolis Parameter on the Earth
ctd | Sample ctd Data
ctd-class | Class to Store CTD (or general hydrographic) Data
ctd.cnv.gz | Sample ctd File in .cnv Format
ctdDecimate | Decimate a ctd Profile
ctdFindProfiles | Find Profiles Within a Tow-Yow ctd Record
ctdFindProfilesRBR | Find Profiles Within a ctd Object Read From a RBR File
ctdRaw | Sample ctd Data, Not Trimmed of Extraneous Data
ctdRepair | Repair a Malformed ctd Object
ctdTrim | Trim Beginning and Ending of a CTD cast
ctd_aml.csv.gz | Sample ctd File in aml Format
CTD_BCD2014666_008_1_DN.ODF.gz | Sample ctd File in .odf Format
ctimeToSeconds | Interpret a Character String as a Time Interval
curl | Curl of 2D Vector Field

## -- D --

d200321-001.ctd.gz | Sample ctd File in .ctd Format
d201211_0011.cnv.gz | Sample ctd File in .cnv Format
dataLabel | Associate Data Names With Units
decimate | Smooth and Decimate, or Subsample, an oce Object
decodeHeaderNortek | Decode a Nortek Header
decodeTime | Oce Version of as.POSIXct
defaultFlags | Suggest a Default Flag Vector for Bad or Suspicious Data
despike | Remove Spikes From a Time Series
detrend | Detrend a Set of Observations
download.amsr | Download and Cache an amsr File
download.coastline | Download a coastline File
download.met | Download and Cache a met File
download.topo | Download and Cache a topo File
drawDirectionField | Draw a Direction Field
drawIsopycnals | Add Isopycnal Curves to a TS Plot
drawPalette | Draw a Palette, Leaving Margins Suitable for an Accompanying Plot

## -- E --

echosounder | Sample echosounder Data
echosounder-class | Class to Store Echosounder Data
eclipticalToEquatorial | Convert Ecliptical Coordinate to Equatorial Coordinate
enuToOther | Rotate Acoustic-Doppler Data to a New Coordinate System
enuToOtherAdp | Convert adp Object from ENU Coordinate to Rotated Coordinate
enuToOtherAdv | Convert ENU to Other Coordinate
equatorialToLocalHorizontal | Convert Equatorial Coordinate to Local Horizontal Coordinate
errorbars | Draw Error Bars on an Existing xy Diagram

## -- F --

fillGap | Fill a Gap in an oce Object
fillGapMatrix | Fill a Gap in a Matrix
findBottom | Find the Ocean Bottom in an Echosounder Object
firstFinite | Get First Finite Value in a Vector or Array.
formatCI | Format a Confidence Interval
formatPosition | Format Geographical Position in Degrees and Minutes
fullFilename | Full Name of File, Including Path

## -- G --

g1sst-class | Class to Store G1SST Satellite/Model Data
gappyIndex | Create a Possibly Gappy Indexing Vector
geodDist | Compute Geodesic Distance on Surface of Earth
geodGc | Great-circle Segments Between Points on Earth
geodXy | Convert From Geographical to Geodesic Coordinates
geodXyInverse | Inverse Geodesic Calculation
GMTOffsetFromTz | Determine Time Offset From Timezone
gps-class | Class to Store GPS Data
grad | Calculate Matrix Gradient
gravity | Acceleration Due to Earth Gravity

## -- H --

handleFlags | Handle Flags in oce Objects (Generic)
handleFlags-method | Handle Flags in adp Objects
handleFlags-method | Handle Flags in argo Objects
handleFlags-method | Handle Flags in ctd Objects
handleFlags-method | Handle Flags in oce Objects
handleFlags-method | Handle flags in section Objects
handleFlags-method | Signal Erroneous Application to non-oce Objects
handleFlags.argo | Handle Flags in argo Objects
handleFlags.section | Handle flags in section Objects
handleFlagsInternal | Low-Level Function for Handling Data-Quality Flags
head.oce | Extract The Start of an Oce Object

## -- I --

imagep | Plot an Image with a Color Palette
initialize-method | Initialize Storage for a ctd Object
initialize.ctd | Initialize Storage for a ctd Object
initializeFlags | Create and Initialize oce Flags
initializeFlags-method | Create and Initialize adp Flags
initializeFlags-method | Create and Initialize oce Flags
initializeFlagScheme | Establish a Data-Quality Scheme for a oce Object
initializeFlagScheme-method | Establish a Data-Quality Scheme for a ctd Object
initializeFlagScheme-method | Establish a Data-Quality Scheme for a oce Object
initializeFlagScheme-method | Establish a Data-Quality Scheme for a section Object
initializeFlagSchemeInternal | Establish a Data-Quality Scheme for a oce Object
initializeFlagsInternal | Create and Initialize oce Flags
integerToAscii | Infer ASCII Code From an Integer Value
integrateTrapezoid | Trapezoidal Integration
interpBarnes | Grid Data Using the Barnes Algorithm
is.ad2cp | Test Whether Item is a ad2cp-Type adp Object

## -- J --

julianCenturyAnomaly | Convert Julian-Day-Number to Julian Century
julianDay | Convert a Time to a Julian Day

## -- L --

labelWithUnit | Create Label With Unit
ladp-class | Class to Store Lowered-adp Data
landsat | Sample landsat Data
landsat-class | Class to Store Landsat Satellite Data
landsatAdd | Add a Band to a landsat Object
landsatTrim | Trim a landsat Image to a Geographical Region
latFormat | Format a Latitude
latlonFormat | Format a Latitude-Longitude Pair
lisst | Sample lisst Data
lisst-class | Class to Store LISST Data
lobo | Sample lobo Data
lobo-class | Class to Store LOBO Data
locationForGsw | Alter Longitude and Latitude for gsw Computations
lon360 | Change Longitude From -180:180 to 0:360 Convention
lonFormat | Format a Longitude
longitudeTighten | Try to Reduce Section Longitude Range
lonlat2map | Convert Longitude and Latitude to X and Y
lonlat2utm | Convert Longitude and Latitude to UTM
lookWithin | Look Within the First Element of a List for Replacement Values
lowpass | Lowpass Digital Filtering

## -- M --

magneticField | Earth Magnetic Declination, Inclination, and Intensity
makeFilter | Make a Digital Filter
map2lonlat | Convert X and Y to Longitude and Latitude
mapArrows | Add Arrows to a Map
mapAxis | Add Axis Labels to an Existing Map
mapContour | Add Contours on a Existing map
mapCoordinateSystem | Draw a Coordinate System
mapDirectionField | Add a Direction Field to an Existing Map
mapGrid | Add a Longitude and Latitude Grid to an Existing Map
mapImage | Add an Image to a Map
mapLines | Add Lines to a Map
mapLocator | Locate Points on a Map
mapLongitudeLatitudeXY | Convert From Longitude and Latitude to X and Y
mapPlot | Draw a Map
mapPoints | Add Points to a Map
mapPolygon | Add a Polygon to a Map
mapScalebar | Add a Scalebar to a Map
mapText | Add Text to a Map
mapTissot | Add Tissot Indicatrices to a Map
matchBytes | Locate Byte Sequences in a Raw Vector
matrixShiftLongitude | Rearrange Areal Matrix so Greenwich is Near the Centre
matrixSmooth | Smooth a Matrix
met | Sample met Data
met-class | Class to Store Meteorological Data
metNames2oceNames | Convert met Data Name to oce Name
moonAngle | Lunar Angle as Function of Space and Time

## -- N --

numberAsHMS | Convert a Numeric Time to Hour, Minute, and Second
numberAsPOSIXct | Convert a Numeric Time to a POSIXct Time

## -- O --

oce-class | Base Class for oce Objects
oce-defunct | Deprecated and Defunct Elements of the oce Package
oce-deprecated | Deprecated and Defunct Elements of the oce Package
oce.approx | Interpolate 1D Data with UNESCO or Reiniger-Ross Algorithm
oce.as.raw | Version of as.raw() That Clips Data
oce.axis.POSIXct | Oce Version of axis.POSIXct
oce.colors9A | Create Colors Similar to the Matlab Jet Scheme
oce.colors9B | Create Colors in a Red-Yellow-Blue Color Scheme
oce.colorsCDOM | Create Colors Suitable for CDOM Fields
oce.colorsChlorophyll | Create Colors Suitable for chlorophyll Fields
oce.colorsDensity | Create Colors Suitable for density Fields
oce.colorsFreesurface | Create Colors Suitable for freesurface Fields
oce.colorsGebco | Create Colors in a GEBCO-like Scheme
oce.colorsJet | Create Colors Similar to the Matlab Jet Scheme
oce.colorsOxygen | Create Colors Suitable for oxygen Fields
oce.colorsPalette | Create a Vector of Colors
oce.colorsPAR | Create Colors Suitable for PAR Fields
oce.colorsPhase | Create Colors Suitable for phase Fields
oce.colorsSalinity | Create Colors Suitable for salinity Fields
oce.colorsTemperature | Create Colors Suitable for temperature Fields
oce.colorsTurbidity | Create Colors Suitable for turbidity Fields
oce.colorsTurbo | Create Colors Similar to the Google Turbo Scheme
oce.colorsTwo | Create Two-Color Palette
oce.colorsVelocity | Create Colors Suitable for velocity Fields
oce.colorsViridis | Create Colors Similar to the Matlab Viridis Scheme
oce.colorsVorticity | Create Colors Suitable for vorticity Fields
oce.contour | Oce Variant of contour
oce.convolve | Convolve Two Time Series
oce.debug | Print a Debugging Message
oce.edit | Edit an Oce Object
oce.filter | Filter a Time Series
oce.grid | Add a Grid to an Existing Oce Plot
oce.plot.ts | Oce Variant of plot.ts
oce.pmatch | Partial Matching of Strings or Numbers
oce.smooth | Smooth an oce Object
oce.spectrum | Normalize a Spectrum
oce.write.table | Write the Data Portion of Object to a File
oceApprox | Interpolate 1D Data with UNESCO or Reiniger-Ross Algorithm
oceAxis | Draw an Axis, Possibly with Decade-style Logarithmic Scaling
ocecolors | Data That Define Some Color Palettes
oceColors9A | Create Colors Similar to the Matlab Jet Scheme
oceColors9B | Create Colors in a Red-Yellow-Blue Color Scheme
oceColorsCDOM | Create Colors Suitable for CDOM Fields
oceColorsChlorophyll | Create Colors Suitable for chlorophyll Fields
oceColorsClosure | Create Color Functions
oceColorsDensity | Create Colors Suitable for density Fields
oceColorsFreesurface | Create Colors Suitable for freesurface Fields
oceColorsGebco | Create Colors in a GEBCO-like Scheme
oceColorsJet | Create Colors Similar to the Matlab Jet Scheme
oceColorsOxygen | Create Colors Suitable for oxygen Fields
oceColorsPalette | Create a Vector of Colors
oceColorsPAR | Create Colors Suitable for PAR Fields
oceColorsPhase | Create Colors Suitable for phase Fields
oceColorsSalinity | Create Colors Suitable for salinity Fields
oceColorsTemperature | Create Colors Suitable for temperature Fields
oceColorsTurbidity | Create Colors Suitable for turbidity Fields
oceColorsTurbo | Create Colors Similar to the Google Turbo Scheme
oceColorsTwo | Create Two-Color Palette
oceColorsVelocity | Create Colors Suitable for velocity Fields
oceColorsViridis | Create Colors Similar to the Matlab Viridis Scheme
oceColorsVorticity | Create Colors Suitable for vorticity Fields
oceContour | Oce Variant of contour
oceConvolve | Convolve Two Time Series
oceCRS | Coordinate Reference System Strings for Some Oceans
oceDebug | Print a Debugging Message
oceDeleteData | Delete Something From the data Slot of an oce Object
oceDeleteMetadata | Delete Something in an oce metadata Slot
oceEdit | Edit an Oce Object
oceFileTrim | Trim an oce File
oceFilter | Filter a Time Series
oceGetData | Extract Something From the data Slot of an oce Object
oceGetMetadata | Extract Something From the metadata Slot of an oce Object
oceMagic | Find the Type of an Oceanographic Data File
oceNames2whpNames | Translate Oce Data Names to WHP Data Names
ocePmatch | Partial Matching of Strings or Numbers
oceProject | Wrapper to sf::sf_project()
oceRenameData | Rename Something in the data slot of an oce Object
oceRenameMetadata | Rename Something in the metadata Slot of an oce Object
oceSetData | Set Something in the data Slot of an oce Object
oceSetMetadata | Set Something in the metadata Slot of an oce Object
oceSmooth | Smooth an oce Object
oceSpectrum | Normalize a Spectrum
oceUnits2whpUnits | Translate oce Unit to WHP Unit
odf-class | Class to Store ODF Data
ODF2oce | Create ODF Object From Output of read_ODF in ODF package
ODFListFromHeader | Create a List of odf Header Metadata
ODFNames2oceNames | Translate ODF CODE Strings to oce Variable Names

## -- P --

parseLatLon | Parse a Latitude or Longitude String
plot-method | Plot an adp Object
plot-method | Plot an adv Object
plot-method | Plot an amsr Object
plot-method | Plot an argo Object
plot-method | Plot a bremen Object
plot-method | Plot a cm Object
plot-method | Plot a coastline Object
plot-method | Plot a ctd Object
plot-method | Plot an echosounder Object
plot-method | Plot a gps Object
plot-method | Plot an ladp Object
plot-method | Plot a landsat Object
plot-method | Plot a lisst Object
plot-method | Plot a lobo object
plot-method | Plot a met Object
plot-method | Plot an oce Object
plot-method | Plot an odf Object
plot-method | Plot a rsk Object
plot-method | Plot a satellite Object
plot-method | Plot a sealevel Object
plot-method | Plot a section Object
plot-method | Plot a tidem Object
plot-method | Plot a topo Object
plot-method | Plot a windrose Object
plot-method | Plot an xbt Object
plot.adp | Plot an adp Object
plot.adv | Plot an adv Object
plot.amsr | Plot an amsr Object
plot.argo | Plot an argo Object
plot.bremen | Plot a bremen Object
plot.cm | Plot a cm Object
plot.coastline | Plot a coastline Object
plot.ctd | Plot a ctd Object
plot.echosounder | Plot an echosounder Object
plot.gps | Plot a gps Object
plot.ladp | Plot an ladp Object
plot.landsat | Plot a landsat Object
plot.lisst | Plot a lisst Object
plot.lobo | Plot a lobo object
plot.met | Plot a met Object
plot.oce | Plot an oce Object
plot.odf | Plot an odf Object
plot.rsk | Plot a rsk Object
plot.satellite | Plot a satellite Object
plot.sealevel | Plot a sealevel Object
plot.section | Plot a section Object
plot.tidem | Plot a tidem Object
plot.topo | Plot a topo Object
plot.windrose | Plot a windrose Object
plot.xbt | Plot an xbt Object
plotInset | Plot an Inset Diagram
plotPolar | Draw a Polar Plot
plotProfile | Plot a ctd Profile
plotScan | Plot a ctd Object in a Low-Level Fashion
plotSticks | Draw a Stick Plot
plotTaylor | Plot a Model-data Comparison Diagram
plotTS | Plot Temperature-Salinity Diagram
predict.tidem | Predict a Tidal Signal
preferAdjusted | Set Preference for Adjusted Values
presentTime | Get the Present Time, in a Stated Timezone
prettyPosition | Pretty Longitude/Latitude in Degree-Minute-Second Format
processingLog<- | Add an Item to a Processing Log
processingLogAppend | Append an Item to a Processing Log
processingLogItem | Create an Item That can be Inserted into a Processing Log
processingLogShow | Show the Processing Log of an oce Object
pwelch | Welch Periodogram

## -- R --

rangeExtended | Calculate Range, Extended a Little, as is Done for Axes
rangeLimit | Substitute NA for Data Outside a Range
read.adp | Read an adp File
read.adp.ad2cp | Read an adp File in Nortek AD2CP Format
read.adp.nortek | Read an adp File in Nortek Format
read.adp.rdi | Read an adp File in Teledyne/RDI Format
read.adp.sontek | Read an adp File in Sontek Format
read.adp.sontek.serial | Read an adp File in Serial Sontek Format
read.adv | Read an adv File
read.adv.nortek | Read an adv File
read.adv.sontek.adr | Read an adv File
read.adv.sontek.serial | Read an adv File
read.adv.sontek.text | Read an adv File
read.amsr | Read an amsr File
read.aquadopp | Read an adp File in Nortek Aquadopp Format
read.aquadoppHR | Read Nortek Aquadopp-HR File
read.aquadoppProfiler | Read an adp File in Nortek Aquadopp Format
read.argo | Read an Argo Data File
read.argo.copernicus | Read an argo File in Copernicus Format
read.bremen | Read a bremen File
read.cm | Read a cm File
read.coastline | Read a coastline File
read.coastline.openstreetmap | Read a coastline File in Openstreetmap Format
read.coastline.shapefile | Read a coastline File in Shapefile Format
read.ctd | Read a ctd File in General Format
read.ctd.aml | Read a ctd File in AML Format
read.ctd.itp | Read a ctd File in ITP Format
read.ctd.odf | Read a ctd File in odf Format
read.ctd.odv | Read a "ctd" File in ODV Format
read.ctd.saiv | Read a ctd File in SAIV Format
read.ctd.sbe | Read a ctd File in Seabird Format
read.ctd.ssda | Read a ctd File in SSDA Format
read.ctd.woce | Read a ctd File in WOCE-Exchange Format
read.ctd.woce.other | Read a ctd File in WOCE-Exchange EXPOCODE Format
read.echosounder | Read an echosounder File
read.g1sst | Read a g1sst File
read.gps | Read a gps File
read.index | Read a NOAA Ocean Index File
read.landsat | Read a landsat File Directory
read.lisst | Read a lisst File
read.lobo | Read a lobo File
read.met | Read a met File
read.netcdf | Read a NetCDF File
read.oce | Read an Oceanographic Data File
read.odf | Read an odf File
read.rsk | Read a rsk File
read.sealevel | Read a sealevel File
read.section | Read a section File
read.topo | Read a topo File
read.woa | Read a World Ocean Atlas NetCDF File
read.xbt | Read an xbt file
read.xbt.edf | Read an xbt File in Sippican Format
read.xbt.noaa1 | Read an xbt File in NOAA Format
rescale | Rescale Values to lie in a Given Range
resizableLabel | Variable Names in Adjustable Sizes
retime | Adjust The Time Within an oce Object
rotateAboutZ | Rotate Velocity Components Within an oce Object
rsk | Sample rsk Data
rsk-class | Class to Store Rsk Data
rsk2ctd | Create a ctd Object from an rsk Object
rskPatm | Estimate Atmospheric Pressure in an rsk Object
rskToc | Decode Table-of-Contents From an rsk File
runlm | Calculate Running Linear Models

## -- S --

satellite-class | Class to Store Satellite Data
sealevel | Sample sealevel Data (Halifax Harbour)
sealevel-class | Class to Store Sealevel Data
sealevelTuktoyaktuk | Sample sealevel Data (Tuktoyaktuk)
secondsToCtime | Express Time Interval as Colon-Separated String
section | Sample section Data
section-class | Class to Store Hydrographic Section Data
sectionAddCtd | Add a ctd Profile to a section Object
sectionAddStation | Add a ctd Profile to a section Object
sectionGrid | Grid a Section in Pressure Space
sectionSmooth | Smooth a Section
sectionSort | Sort a Section
setFlags | Set Data-Quality Flags within a oce Object
setFlags-method | Set Data-Quality Flags within a adp Object
setFlags-method | Set Data-Quality Flags within a ctd Object
setFlags-method | Set Data-Quality Flags within a oce Object
shiftLongitude | Shift Longitude to Range -180 to 180
showMetadataItem | Show an Item in the metadata Slot of an oce Object
siderealTime | Convert From POSIXt Time to Sidereal Time
snakeToCamel | Convert From Snake-Case to Camel-Case Notation
standardDepths | Standard Oceanographic Depths
standardizeLongitude | Put Longitude in the Range From -180 to 180
subset-method | Subset an adp Object
subset-method | Subset an adv Object
subset-method | Subset an amsr Object
subset-method | Subset an argo Object
subset-method | Subset a cm Object
subset-method | Subset a coastline Object
subset-method | Subset a ctd Object
subset-method | Subset an echosounder Object
subset-method | Subset a lobo Object
subset-method | Subset a met Object
subset-method | Subset an oce Object
subset-method | Subset an odf Object
subset-method | Subset a rsk Object
subset-method | Subset a sealevel Object
subset-method | Subset a section Object
subset-method | Subset a topo Object
subset-method | Subset an xbt Object
subset.argo | Subset an argo Object
subset.coastline | Subset a coastline Object
subset.section | Subset a section Object
subtractBottomVelocity | Subtract Bottom Velocity From an adp Object
summary-method | Summarize an adp Object
summary-method | Summarize an adv Object
summary-method | Summarize an amsr Object
summary-method | Summarize an argo Object
summary-method | Summarize a bremen Object
summary-method | Summarize a cm Object
summary-method | Summarize a coastline Object
summary-method | Summarize a ctd Object
summary-method | Summarize an echosounder Object
summary-method | Summarize a gps Object
summary-method | Summarize an ladp Object
summary-method | Summarize a landsat Object
summary-method | Summarize a lisst Object
summary-method | Summarize a lobo Object
summary-method | Summarize a met Object
summary-method | Summarize an oce Object
summary-method | Summarize an odf Object
summary-method | Summarize a rsk Object
summary-method | Summarize a satellite Object
summary-method | Summarize a sealevel Object
summary-method | Summarize a section Object
summary-method | Summarize a tidem Object
summary-method | Summarize a topo Object
summary-method | Summarize a windrose Object
summary-method | Summarize an xbt Object
summary.adp | Summarize an adp Object
summary.argo | Summarize an argo Object
summary.coastline | Summarize a coastline Object
summary.ctd | Summarize a ctd Object
summary.section | Summarize a section Object
sunAngle | Solar Angle as Function of Space and Time
sunDeclinationRightAscension | Sun Declination and Right Ascension
swAbsoluteSalinity | Seawater Absolute Salinity (GSW Formulation)
swAlpha | Seawater Thermal Expansion Coefficient
swAlphaOverBeta | Ratio of Seawater Thermal Expansion Coefficient to Haline Contraction Coefficient
swBeta | Seawater Haline Contraction Coefficient
swConservativeTemperature | Seawater Conservative Temperature (GSW Formulation)
swCSTp | Electrical Conductivity Ratio From Salinity, Temperature and Pressure
swDepth | Water Depth
swDynamicHeight | Dynamic Height of a Seawater Profile
swLapseRate | Seawater Lapse Rate
swN2 | Squared Buoyancy Frequency for Seawater
swPressure | Water Pressure
swRho | Seawater Density
swRrho | Density Ratio
swSCTp | Practical Salinity From Electrical Conductivity, Temperature and Pressure
swSigma | Seawater Density Anomaly
swSigma0 | Seawater Potential Density Anomaly Referenced to Surface Pressure
swSigma1 | Seawater Potential Density Anomaly Referenced to 1000db Pressure
swSigma2 | Seawater Potential Density Anomaly Referenced to 2000db Pressure
swSigma3 | Seawater Potential Density Anomaly Referenced to 3000db Pressure
swSigma4 | Seawater Potential Density Anomaly Referenced to 4000db Pressure
swSigmaT | Seawater Quasi-Potential Density Anomaly
swSigmaTheta | Seawater Potential Density Anomaly
swSoundAbsorption | Seawater Sound Absorption
swSoundSpeed | Seawater Sound Speed
swSpecificHeat | Seawater Specific Heat
swSpice | Seawater Spiciness
swSpiciness0 | Spiciness in gsw System, Referenced to Surface Pressure
swSpiciness1 | Spiciness in gsw System, Referenced to 1000 dbar Pressure
swSpiciness2 | Spiciness in gsw System, Referenced to 2000 dbar Pressure
swSR | Seawater Reference Salinity (GSW Formulation)
swSstar | Seawater Preformed Salinity (GSW Formulation)
swSTrho | Seawater Salinity From Temperature and Density
swTFreeze | Seawater Freezing Temperature
swThermalConductivity | Seawater Thermal Conductivity
swTheta | Seawater Potential Temperature (UNESCO Version)
swTSrho | Seawater Temperature from Salinity and Density
swViscosity | Seawater Viscosity
swZ | Vertical Coordinate

## -- T --

T68fromT90 | Convert From ITS-90 to IPTS-68 Temperature
T90fromT48 | Convert From ITS-48 to ITS-90 Temperature
T90fromT68 | Convert From IPTS-68 to ITS-90 Temperature
tail.oce | Extract the End of an Oce Object
threenum | Calculate Minimum, Mean, and Maximum Values
tidalCurrent | Tidal Current Dataset
tidedata | Tidal Constituent Information
tidem | Fit a Tidal Model to a Timeseries
tidem-class | Class to Store Tidal Models
tidemAstron | Astronomical Calculations for tidem
tidemConstituentNameFix | Change Tidal Constituent Name from T-TIDE to Foreman Convention
tidemVuf | Nodal Modulation Calculations for Tidal Analyses
timeToArgoJuld | Convert Time to Argo Julian Day (juld)
titleCase | Capitalize First Letter of Each of a Vector of Words
toEnu | Rotate Acoustic-Doppler Data to the ENU Coordinate System
toEnuAdp | Convert an adp Object to ENU Coordinates
toEnuAdv | Convert an adv Object to ENU Coordinates
topo-class | Class to Store Topographic Data
topoInterpolate | Interpolate Within a topo Object
topoWorld | Global Topographic Data (at Half-degree Resolution)

## -- U --

unabbreviateYear | Determine Year From Various Abbreviations
undriftTime | Correct for Drift in an Instrument Clock
unduplicateNames | Rename Duplicated Character Strings
ungrid | Extract (x, y, z) From (x, y, grid)
unitFromString | Decode Units From Strings
unitFromStringRsk | Infer rsk Units From a Vector of Strings
unwrapAngle | Unwrap an Angle That Suffers Modulo-360 Problems
useHeading | Replace the Heading for One Instrument With That of Another
usrLonLat | Calculate Geographic Coordinates of Plot Box
utm2lonlat | Convert UTM to Longitude and Latitude

## -- V --

vectorShow | Show Some Values From a List, Vector or Matrix
velocityStatistics | Report Statistics of adp or adv Velocities

## -- W --

webtide | Get a Tidal Prediction From a WebTide Database
wind | Sample Wind Data
window.oce | Window an oce Object by Time or Distance
windrose-class | Class to Store windrose Data
woceNames2oceNames | Translate WOCE Data Names to Oce Data Names
woceUnit2oceUnit | Translate WOCE Units to oce Units
write.ctd | Save a ctd Object in a CSV File

## -- X --

xbt | Sample xbt Data
xbt-class | Class to Store XBT (Expendable Bathythermograph) Data
xbt.edf | Sample xbt File in .edf Format
xyzToEnu | Convert Acoustic-Doppler Data From XYZ to ENU Coordinates
xyzToEnuAdp | Convert adp Object From XYZ to ENU Coordinates
xyzToEnuAdpAD2CP | Convert adp Object of AD2CP type From XYZ to ENU Coordinates
xyzToEnuAdv | Convert an adv Object From XYZ to ENU Coordinates

## -- misc --

[[-method | Extract Something From an adp Object
[[-method | Extract Something from an adv Object
[[-method | Extract Something From an amsr Object
[[-method | Extract Something From an argo Object
[[-method | Extract Something From a bremen Object
[[-method | Extract Something From a cm Object
[[-method | Extract Something From a coastline Object
[[-method | Extract Something From a ctd Object
[[-method | Extract Something From an echosounder Object
[[-method | Extract Something From a g1sst Object
[[-method | Extract Something From a gps Object
[[-method | Extract Something From an ladp Object
[[-method | Extract Something From a landsat Object
[[-method | Extract Something From a lisst Object
[[-method | Extract Something From a lobo Object
[[-method | Extract Something From a met Object
[[-method | Extract Something From an oce Object
[[-method | Extract Something From an odf Object
[[-method | Extract Something From a rsk Object
[[-method | Extract Something From a sealevel Object
[[-method | Extract Something From a section Object
[[-method | Extract Something From a tidem Object
[[-method | Extract Something From a topo Object
[[-method | Extract Something From a windrose Object
[[-method | Extract Something From an xbt Object
[[<--method | Replace Parts of an adp Object
[[<--method | Replace Parts of an adv Object
[[<--method | Replace Parts of an amsr Object
[[<--method | Replace Parts of an argo Object
[[<--method | Replace Parts of a bremen Object
[[<--method | Replace Parts of a cm Object
[[<--method | Replace Parts of a coastline Object
[[<--method | Replace Parts of a ctd Object
[[<--method | Replace Parts of an echosounder Object
[[<--method | Replace Parts of a g1sst Object
[[<--method | Replace Parts of a gps Object
[[<--method | Replace Parts of an ladp Object
[[<--method | Replace Parts of a landsat Object
[[<--method | Replace Parts of a lisst Object
[[<--method | Replace Parts of a lobo Object
[[<--method | Replace Parts of a met Object
[[<--method | Replace Parts of an oce Object
[[<--method | Replace Parts of an odf Object
[[<--method | Replace Parts of an rsk Object
[[<--method | Replace Parts of a sealevel Object
[[<--method | Replace Parts of a section Object
[[<--method | Replace Parts of a tidem Object
[[<--method | Replace Parts of a topo Object
[[<--method | Replace Parts of a windrose Object
[[<--method | Replace Parts of an xbt Object