augment_linelist        Append summaries of outbreaker results to a
                        linelist
filter_chain            Filter chain by parameter threshold
get_Ri                  Compute case reproduction numbers (Ri) from
                        outbreaker2 chains
get_accuracy            Calculate the accuracy of outbreak
                        reconstruction
get_consensus           Get the consensus transmission tree
get_entropy             Compute the entropy of transmission trees
get_si                  Compute the serial interval (si) from
                        transmission trees
get_trees               Extract posterior transmission trees
identify                Replace integers in outbreaker2 output with
                        unique identifiers
linelist                Simulated linelist with group labels
out                     outbreaker2 toy dataset
sample.outbreaker_chains
                        Sample rows from an outbreaker_chains object
ttable                  Compute the transmission contingency table
