R: Nucleome Imaging Toolbox

# Nucleome Imaging Toolbox

## Documentation for package ‘nucim’ version 1.0.13

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

barplot_with_interval | Barplot with Intervals
barplot_with_interval_23 | Barplot with Intervals for two or three bars beside
class.neighbours | Class neighbourhood distribution
class.neighbours.folder | class.neighbours.folder
classify | Classify DAPI
classify.folder | Classify DAPI
classify.single | Classify DAPI
classify.table | Count classes in classified image
colors.in.classes | Compute colors in classes distribution
colors.in.classes.folder | Compute colors in classes distribution for folders
compute.distance2border | Compute distance to border of classes
dapimask | Mask DAPI in kernel
dapimask.file | Automatic DAPI mask segmentation for files
dapimask.folder | Automatic DAPI mask segmentation for folder
find.spots.file | Detects spots for one file
find.spots.folder | Detects spots
heatmap.color | Heatmap colors for n classes
heatmap7 | Heatmap colors for 7 classes
nearestClassDistances.folder | Find all distances to next neighbour of all classes for folders
plot_classify.folder | Plot barplot for classified images in a folder
plot_colors.in.classes.folder | Plot for colors in classes distribution for folders
plot_nearestClassDistances.folder | Plots all distances to next neighbour of all classes for folders
splitchannel | Split RGB channels
splitchannels | Split RGB images into channels and pixel size information
splitchannels.file | Split channels into files and extracts size in microns
splitchannels.folder | Split RGB images into channels and pixel size information
spots.combined | Find spots using information from two channels
spots.combined.file | Find spots using information from two channels
spots.combined.folder | Find spots using information from two channels for folder
t_colors.in.classes.folder | Test for colors in classes distribution for folders